I was going through the RNASeqGene workflow today (http://www.bioconductor.org/help/workflows/rnaseqGene/) and I think there may be a minor typo inside. When creating the first summarizedExperiment the workflow says "This experiment was not strand-specific so we set
FALSE.", which seems backwards to me. I just wanted to mention this in what is otherwise a fantastic introduction to RNASeq analysis in R.