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rnaseqgene
•
reset
1
vote
2
replies
148
views
toptable sort .by set
limma
rnaseqGene
3 months ago
snowmattin
• 0
0
votes
1
reply
248
views
Ensembl dataset version
tximport
rna
rnaseqGene
biomaRt
updated 7 months ago by
ATpoint
★ 1.4k • written 7 months ago by
st3472
• 0
6
votes
10
replies
602
views
rnaseqGene: Different output when generating step by step airway dataset
tximeta
DESeq2
rnaseqGene
updated 9 months ago by
Michael Love
37k • written 9 months ago by
jorgeplaza
▴ 20
4
votes
1
reply
427
views
mitochondrial RNA percentage in bulk RNAseq data
rnaseqGene
RNASeqR
DESeq2
RNAseq
updated 9 months ago by
Michael Love
37k • written 9 months ago by
sohail.mbio
▴ 10
1
vote
1
reply
237
views
Deseq2 Resul variation by LFC variation
rnaseqGene
DESeq2
Transcriptomics
updated 10 months ago by
Michael Love
37k • written 10 months ago by
diangomaiga
• 0
2
votes
2
replies
567
views
DESeq2 - one groups with no replicates
DESeq2
rnaseqGene
DifferentialExpression
GeneExpression
14 months ago
SUMIT
• 0
0
votes
0
replies
273
views
display .CT files in a BioC package
RNAinteract
rnaseqGene
RNASeqRData
rnaseqcomp
18 months ago
Bogdan
▴ 640
1
vote
6
replies
557
views
Contamination in bulkseq samples. Looking at correlated genes?
RNASeqData
DESeq2
rnaseqGene
18 months ago
Seaweed
• 0
3
votes
3
replies
373
views
A problem about RNA-seq workflow:9 Time course experiments
rnaseqgene
updated 2.2 years ago by
Michael Love
37k • written 2.2 years ago by
Guandong Shang
▴ 20
1
vote
3
replies
282
views
typo in rnaseqGene workflow vignette.
rnaseqGene
workflow
deseq2
updated 2.6 years ago by
Michael Love
37k • written 2.6 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
7
replies
1.9k
views
Issue installing RNA-seq workflow
software error
deseq2
workflow
rnaseqGene
updated 3.2 years ago by
Martin Morgan
25k • written 3.2 years ago by
pavan-bioconductor
• 0
0
votes
2
replies
445
views
DESEQ2: rnaseqGene fisison tutorial time course graph has non-numerical x-axis
deseq2
rnaseqGene
3.4 years ago
courtney.stairs
• 0
1
vote
2
replies
698
views
how to install package of "rnaseqGene" for R (ver: 3.5.2) for windows
rnaseqGene
updated 3.5 years ago by
James W. MacDonald
60k • written 3.5 years ago by
mheydarpour
▴ 10
3
votes
5
replies
3.2k
views
How to find Top 10 expressed genes in DESeq2
deseq2
baseMean
differential gene expression
rnaseqgene
updated 3.5 years ago by
swbarnes2
★ 1.1k • written 3.5 years ago by
melkile26
• 0
1
vote
3
replies
613
views
how to find expressed genes in RNAseq
deseq2
rnaseq
differential gene expression
featurecounts
rnaseqGene
3.7 years ago • updated 3.6 years ago
melkile26
• 0
2
votes
5
replies
974
views
Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
rnaseq
rnaseqgene
R 3.4.2 Mac
updated 4.3 years ago by
shepherl
3.2k • written 4.3 years ago by
harry.horsnell.17
• 0
0
votes
2
replies
808
views
Is there a data package containing complex RNA-Seq data?
RNAseqdataset
airway
deseq2
rangedsummarizedexperiment
rnaseqgene
updated 4.4 years ago by
mario.zanfardino
▴ 160 • written 4.4 years ago by
ap3637
• 0
0
votes
1
reply
1.3k
views
can't install workflow "rnaseqGene" with Bioconductor version3.3
bioconductor
workflowinstall
error
rnaseqgene
updated 6.2 years ago by
Valerie Obenchain
★ 6.7k • written 6.2 years ago by
cagenet34
▴ 20
0
votes
4
replies
1.2k
views
workflow.R in BioC 3.3
workflows
rnaseqgene
updated 6.2 years ago by
j.baldauf
• 0 • written 6.2 years ago by
yasmin.friedmann
• 0
2
votes
5
replies
2.3k
views
Programs used in RNA-seq workflow
deseq2
bioconductor
workflows
differential gene expression
rnaseqgene
6.4 years ago
cirisarri95
• 0
0
votes
1
reply
1.6k
views
Unable to access index for repository... rnaseqGene sequencing workflows
rnaseqGene
genomic sequencing
updated 6.8 years ago by
Dan Tenenbaum
★ 8.2k • written 6.8 years ago by
virctoalgn
• 0
0
votes
6
replies
3.1k
views
Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) :
R
differential expression
rnaseqgene
6.8 years ago
JunLVI
▴ 40
3
votes
2
replies
1.3k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db
annotation
rnaseqgene
updated 7.1 years ago by
James W. MacDonald
60k • written 7.1 years ago by
michael.willcockson
• 0
6
votes
8
replies
1.8k
views
error in RNA-Seq workflow at the gene level
rnaseqgene
genomicalignments
updated 7.2 years ago by
Dan Tenenbaum
★ 8.2k • written 7.2 years ago by
hope-dream
• 0
0
votes
2
replies
2.5k
views
Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2
deseqdataset
rnaseqgene
fastq
reference genome
updated 7.3 years ago by
James W. MacDonald
60k • written 7.3 years ago by
greg.mulhearn
• 0
0
votes
2
replies
3.4k
views
Plots and Heat Maps not displaying in RGui Window
plot
heatmap
graphical
rnaseqgene
deseqdataset
7.3 years ago
greg.mulhearn
• 0
0
votes
3
replies
1.2k
views
Questions regarding convertIDs in the rnaseqGene Package
rnaseqGene
convertIDs
7.4 years ago
Cheng-Yuan Kao
▴ 80
0
votes
0
replies
855
views
Minor error in the RNASeqGene workflow
rnaseqgene
7.5 years ago
snf
• 0
28 results • Page
1 of 1
Recent ...
Replies
Comment: Retrieve gene summary start/end in biomart query
by
rbenel
▴ 20
Hi Mike, I have tried the query without the transcript, and I believe there are cases where I will receive unique transcript start/end si…
Comment: MMDiff2 memory issues
by
e.iich
• 0
running against a similar issue. Have you found any solutions?
Answer: mapToAlignments_issue
by
Hervé Pagès
15k
> I would expect in case of reverse alignment lifted ranges to correspond to position 91-100 of the query sequence. Nope. Local coordinate…
Answer: Problem related to `biomaRt::getBM()` during `R CMD check` execution
by
James W. MacDonald
60k
Does the section in the biomaRt vignette that talks about caching (and using a temp dir) help?
Comment: OPLS-DA: confidence interval for accuracy metric
by
Eddie
• 0
Worked well under pROC. Thank you
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
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