Showing : rnaseqgene • reset
1
vote
4
replies
224
views
rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 28 days ago by 41k • written 28 days ago by ▴ 60
0
votes
2
replies
461
views
R could not could not find function "makeTxDbFromGFF" after loading (GenomicFeatures)
rnaseqGene
updated 4 months ago by 41k • written 4 months ago by • 0
1
vote
3
replies
605
views
Bulk RNA seq with deseq2, rnaseqGene, or edgeR
DESeq2 edgeR rnaseqGene
updated 10 months ago by 41k • written 11 months ago by • 0
0
votes
3
replies
1.1k
views
Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 12 months ago by 64k • written 12 months ago by • 0
1
vote
2
replies
622
views
toptable sort .by set
limma rnaseqGene
19 months ago snowmattin • 0
0
votes
1
reply
739
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 23 months ago by ★ 3.6k • written 23 months ago by • 0
6
votes
10
replies
1.3k
views
rnaseqGene: Different output when generating step by step airway dataset
tximeta DESeq2 rnaseqGene
updated 2.1 years ago by 41k • written 2.1 years ago by ▴ 20
4
votes
1
reply
1.6k
views
mitochondrial RNA percentage in bulk RNAseq data
rnaseqGene RNASeqR DESeq2 RNAseq
updated 2.1 years ago by 41k • written 2.1 years ago by ▴ 10
2
votes
2
replies
675
views
Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
2.1 years ago • updated 6 months ago diangomaiga • 0
2
votes
2
replies
1.4k
views
DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
2.5 years ago SUMIT • 0
0
votes
0
replies
622
views
display .CT files in a BioC package
RNAinteract rnaseqGene RNASeqRData rnaseqcomp
2.8 years ago Bogdan ▴ 670
1
vote
6
replies
1.2k
views
Contamination in bulkseq samples. Looking at correlated genes?
RNASeqData DESeq2 rnaseqGene
2.8 years ago Seaweed • 0
3
votes
3
replies
747
views
A problem about RNA-seq workflow:9 Time course experiments
rnaseqgene
updated 3.5 years ago by 41k • written 3.5 years ago by ▴ 40
1
vote
3
replies
627
views
typo in rnaseqGene workflow vignette.
rnaseqGene workflow deseq2
updated 3.9 years ago by 41k • written 3.9 years ago by ★ 1.5k
0
votes
7
replies
2.7k
views
Issue installing RNA-seq workflow
software error deseq2 workflow rnaseqGene
updated 4.5 years ago by 25k • written 4.5 years ago by • 0
0
votes
2
replies
792
views
DESEQ2: rnaseqGene fisison tutorial time course graph has non-numerical x-axis
deseq2 rnaseqGene
4.7 years ago courtney.stairs • 0
1
vote
2
replies
1.1k
views
how to install package of "rnaseqGene" for R (ver: 3.5.2) for windows
rnaseqGene
updated 4.8 years ago by 64k • written 4.8 years ago by ▴ 10
3
votes
5
replies
6.7k
views
How to find Top 10 expressed genes in DESeq2
deseq2 baseMean differential gene expression rnaseqgene
updated 4.8 years ago by ★ 1.3k • written 4.8 years ago by • 0
1
vote
3
replies
1.1k
views
how to find expressed genes in RNAseq
deseq2 rnaseq differential gene expression featurecounts rnaseqGene
5.0 years ago • updated 4.9 years ago melkile26 • 0
2
votes
5
replies
1.4k
views
Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
rnaseq rnaseqgene R 3.4.2 Mac
updated 5.6 years ago by 3.6k • written 5.6 years ago by • 0
0
votes
2
replies
1.1k
views
Is there a data package containing complex RNA-Seq data?
RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene
updated 5.7 years ago by ▴ 160 • written 5.7 years ago by • 0
0
votes
1
reply
1.7k
views
can't install workflow "rnaseqGene" with Bioconductor version3.3
bioconductor workflowinstall error rnaseqgene
updated 7.5 years ago by ★ 6.8k • written 7.5 years ago by ▴ 20
0
votes
4
replies
1.6k
views
workflow.R in BioC 3.3
workflows rnaseqgene
updated 7.5 years ago by • 0 • written 7.5 years ago by • 0
2
votes
5
replies
2.9k
views
Programs used in RNA-seq workflow
deseq2 bioconductor workflows differential gene expression rnaseqgene
7.7 years ago cirisarri95 • 0
0
votes
1
reply
1.9k
views
Unable to access index for repository... rnaseqGene sequencing workflows
rnaseqGene genomic sequencing
updated 8.1 years ago by ★ 8.2k • written 8.1 years ago by • 0
0
votes
6
replies
3.7k
views
Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) :
R differential expression rnaseqgene
8.1 years ago JunLVI ▴ 40
3
votes
2
replies
1.7k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 8.4 years ago by 64k • written 8.4 years ago by • 0
6
votes
8
replies
2.3k
views
error in RNA-Seq workflow at the gene level
rnaseqgene genomicalignments
updated 8.5 years ago by ★ 8.2k • written 8.5 years ago by • 0
0
votes
2
replies
2.9k
views
Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 deseqdataset rnaseqgene fastq reference genome
updated 8.6 years ago by 64k • written 8.6 years ago by • 0
0
votes
2
replies
4.7k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
8.6 years ago greg.mulhearn • 0
0
votes
3
replies
1.6k
views
Questions regarding convertIDs in the rnaseqGene Package
rnaseqGene convertIDs
8.7 years ago Cheng-Yuan Kao ▴ 100
0
votes
0
replies
1.1k
views
Minor error in the RNASeqGene workflow
rnaseqgene
8.8 years ago snf • 0
32 results • Page 1 of 1
Recent ...
Replies
Comment: How to read fcs3.2 files by James W. MacDonald 64k
You need to supply more information than saying you tried things and they didn't work. Show code with error messages.
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Looks good then.
Answer: DESeq2 : stat or lfcshrink for GSEA analysis by Michael Love 41k
There have been many threads on this support site on this topic.
Answer: Filter genes by expression for voomLmFit by James W. MacDonald 64k
`voomLmFit` is meant to be able to correctly specify the degrees of freedom when you have lots of zeros (as well as iterating if you use `d…
Comment: How to get DMR for Infinium methylation EPIC v2 by James W. MacDonald 64k
You want to make sure that you already have a `GenomicRatioSet` that you pass into `cpg.annotate`. ``` eset <- preprocessFunnorm(dat) myAn…
Votes
Answer: SingleR annotation of several slots/patients
Answer: List of Deprecated Packages for Bioc3.18
Attempting to import SBML file using R
Answer: RNASeq time course analysis, missing time points for control
Answer: biomaRt not working - lazy table error
Awards • All
Popular Question to Henrik Bengtsson ★ 2.4k
Popular Question to paul.johnston ▴ 10
Teacher to Mike Smith ★ 6.2k
Popular Question to Bine ▴ 20
Popular Question to Robert Castelo ★ 3.0k
Locations • All
United States, 14 minutes ago
India, 19 minutes ago
United States, 22 minutes ago
Republic of Ireland, 33 minutes ago
United States, 50 minutes ago
Traffic: 934 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6