gregmisc package-problems with BioC latest release?
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@fatima-nunez-300
Last seen 7.7 years ago
Hello all, I am not sure whether this is a question that should be addressed to the R list or the Bioconductor one. If you feel that this is not a Bioconductor issue, I apologize in advance. I have just installed the latest R version form CRAN: > version _ platform i386-pc-mingw32 arch i386 os mingw32 system i386, mingw32 status major 2 minor 0.0 year 2004 month 10 day 04 language R And also the latest Bioconductor release with no problems whatsoever: > source("http://www.bioconductor.org/getBioC.R") > getBioC() Running getBioC version 1.2.67.... If you encounter problems, first make sure that you are running the latest version of getBioC() which can be found at: www.bioconductor.org/getBioC.R Please direct any concerns or questions to bioconductor@stat.math.ethz.ch. . . . >From URL: http://www.bioconductor.org/repository/release1.5/package/Win32 affyPLM version 1.2.5 Biobase version 1.5.0 annotate version 1.5.1 genefilter version 1.5.0 geneplotter version 1.5.0 ROC version 1.0.13 siggenes version 1.2.11 marray version 1.5.25 edd version 1.5.0 >From URL: http://www.bioconductor.org//CRANrepository limma version 1.8.6 You have downloaded a default set of packages. However, when I install the package "gregmisc" from CRAN and I try to access it I get the following: > local({a <- CRAN.packages() + install.packages(select.list(a[,1],,TRUE), .libPaths()[1], available=a, dependencies=TRUE)}) trying URL `http://cran.r-project.org/bin/windows/contrib/2.0/PACKAGES' Content type `text/plain; charset=iso-8859-1' length 22200 bytes opened URL downloaded 21Kb trying URL `http://cran.r-project.org/bin/windows/contrib/2.0/gregmisc_2.0.0.zip' Content type `application/zip' length 687958 bytes opened URL downloaded 671Kb bundle 'gregmisc' successfully unpacked and MD5 sums checked Delete downloaded files (y/N)? y updating HTML package descriptions > library(gregmisc) Error in library(gregmisc) : There is no package called 'gregmisc' Am I missing something? Am I doing anything wrong? Any help would be greatly appreciated. Thanks everyone in advance and have a good day. F?tima --- F?tima N??ez Centro de Investigaci?n del C?ncer, CIC Universidad de Salamanca-CSIC Campus Unamuno 37007 Salamanca Phone: + 34 923 294802 Fax: + 34 923 294795 E-mail: fnunez@usal.es
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase • 929 views
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Jeff Gentry ★ 3.9k
@jeff-gentry-12
Last seen 7.7 years ago
> I am not sure whether this is a question that should be addressed to > the R list or the Bioconductor one. If you feel that this is not a > Bioconductor issue, I apologize in advance. I have just installed the > latest R version form CRAN: Unless I am missing something, I'm confused as to why you would think that it even might be a Bioconductor issue?
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Seth Falcon ★ 7.4k
@seth-falcon-992
Last seen 7.7 years ago
On Tue, Nov 02, 2004 at 05:49:22PM +0100, F?tima N??ez Mangado wrote: > > library(gregmisc) > Error in library(gregmisc) : There is no package called 'gregmisc' > > Am I missing something? Am I doing anything wrong? Any help would be greatly > appreciated. The gregmisc package has turned into a "bundle". Effectively, this means it has been split into a set of smaller packages: gtools, gdata, gmodels, gplots. Try loading one/all of those. + seth
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