Error from BSgenome forge using .2bit file
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mbk0asis • 0
@mbk0asis-7155
Last seen 9 months ago
Korea, Republic Of

Hi.

I'm trying to build a custom bovine BSgenome using NCBI UMD3.1.1.

I converted 'genome.fa' to 'genome.2bit' using 'faToTwoBit' from UCSC.

In R,

> library(BSgenome)
> forgeBSgenomeDataPkg("/PATH/TO/genome.2bit")
Error in substr(lines, 1L, 1L) : invalid multibyte string at '<f2>x'
In addition: There were 50 or more warnings (use warnings() to see the first 50)

Does it mean that the 2bit file have some problem?

 

 

BSgenome forge 2bit bsgnome forge 2bit file • 809 views
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Entering edit mode
@herve-pages-1542
Last seen 1 day ago
Seattle, WA, United States

See my answer here:

A: How do I create BSgenome Bos_taurus_UMD3.1?

H.

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