Question: Gviz IdeogramTrack fails if species has no band information
0
4.3 years ago by
Finland
ari.loytynoja0 wrote:

With a previous version of Gviz I could plot an ideogram for dog: the ideogram had no bands but it showed the location of the region. With the new version I now get an error.

> packageVersion("Gviz") [1] ‘1.11.12’ > idxTrack <- IdeogramTrack(genome = "canFam3", chromosome = "chr28") Error in if (any(bnames == "")) bnames[bnames == ""] <- sprintf("band_%i",  :   missing value where TRUE/FALSE needed

ideogram gviz • 752 views
modified 4.3 years ago by florian.hahne@novartis.com1.6k • written 4.3 years ago by ari.loytynoja0
Answer: Gviz IdeogramTrack fails if species has no band information
0
4.3 years ago by
Switzerland

Should be fixed in version 1.10.11. Thanks for reporting.

Florian

Thanks!

I saw a similar issue being reported for human MT. I thought that the development version would already contain the fix (as shown above, I tried version 1.11.12) but it gives an error with dog and I therefore reported it again.

Does it mean that the last number of release and development versions are not synced and 1.10.11 will be ahead of 1.11.12?

Answer: Gviz IdeogramTrack fails if species has no band information
0
4.3 years ago by
Switzerland

Not really,

this was introduced by another fix that I did not test properly. The new fix will be available both in devel 1.11.13 and in prod 1.10.11.