I need to include Results and Reports of the System calls in Sweave pdf Report but i can't find any parameter for that in chunk parameters.
for example when i apply the code below :
> system(" makeblastdb -in mouseX.fasta -dbtype nucl -parse_seqids -out mouseXdb")
it Reports :
Building a new DB, current time: 05/01/2015 18:31:57 New DB name: mouseXdb New DB title: mouseX.fasta Sequence type: Nucleotide Keep Linkouts: T Keep MBits: T Maximum file size: 1000000000B Adding sequences from FASTA; added 1 sequences in 1.08783 seconds.
but I can't put it in Sweave Report with parameters like print, echo and or any other parameters...
as another example I want to include header of a file in my Report using System call to header command
thanks for reading