Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
rstudio
•
reset
0
votes
13
replies
438
views
GenomeInfoDbData had non-zero exit status
DESeq2
RStudio
GenomeInfoDbData
hadnon-zeroexitstatus
4 weeks ago • updated 27 days ago
JoseR
• 0
3
votes
4
replies
294
views
DESeq2::plotPCA plotting error
RStudio
PCA
DESeq2
updated 3 months ago by
swbarnes2
★ 1.1k • written 3 months ago by
960942
• 0
0
votes
0
replies
330
views
function GDCquery_Maf error
rstudio
maftools
4 months ago
misslubblys
• 0
8
votes
9
replies
1.1k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 6 months ago by
Hervé Pagès
15k • written 6 months ago by
jon.klonowski
▴ 40
0
votes
3
replies
445
views
Reading large file (15GB) in R
R
Rstudio
Bioconducter
statistics
updated 5 months ago by
Sean Davis
21k • written 6 months ago by
nabiyogesh
▴ 10
0
votes
0
replies
177
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
9 months ago
HELEN
• 0
0
votes
1
reply
231
views
TFBSTools and readFASTA
TFBSTools
DNASeqData
readFASTA
DNA
RStudio
updated 9 months ago by
James W. MacDonald
60k • written 9 months ago by
HELEN
• 0
0
votes
0
replies
196
views
TFBSTools- analysis for trascriprion factors
TFBSTools
RStudio
R
9 months ago
HELEN
• 0
1
vote
5
replies
713
views
DESeq2: All samples have 0 counts for all genes. check the counting script
DESeq2
RStudio
10 months ago
Sonia
• 0
0
votes
1
reply
1.2k
views
Unable to Install packages in R
rstudio
updated 11 months ago by
James W. MacDonald
60k • written 11 months ago by
Fiona
• 0
0
votes
4
replies
1.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
11 months ago
HELEN
• 0
5
votes
15
replies
4.0k
views
Can't able to install Seurat in Rstudio
Rstudio
Seurat
updated 14 months ago by
Kevin Blighe
3.6k • written 14 months ago by
KOUSTAV
• 0
1
vote
7
replies
925
views
Error with hclust
dendrogram
hclust
textanalysis
R
RStudio
16 months ago • updated 15 months ago
Abby
▴ 10
0
votes
1
reply
320
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups
RStudio
DECIPHER
Specificprimers
updated 17 months ago by
Erik Wright
▴ 150 • written 17 months ago by
noeliaruizalonso23
• 0
1
vote
5
replies
1.3k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw
rtracklayer
http
RStudio
updated 20 months ago by
Michael Lawrence
11k • written 20 months ago by
Søren
• 0
0
votes
1
reply
329
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub
Shiny
Rstudio
updated 2.4 years ago by
shepherl
3.2k • written 2.4 years ago by
bwiley4
• 0
0
votes
5
replies
628
views
readTranscriptFeatures from genomation
R
Rstudio
Error
readTranscriptFeatures
genomation
updated 2.7 years ago by
altuna akalin
▴ 20 • written 2.7 years ago by
hwaterma
• 0
2
votes
1
reply
2.2k
views
Error: status was 'SSL connect error'
bioconductor
proxy
macOS
R
RStudio
updated 2.8 years ago by
Martin Morgan
25k • written 2.8 years ago by
mcall
▴ 20
0
votes
5
replies
811
views
Using RStudio AMI with localhost
RStudio
AWS
AMI
3.1 years ago
bio-explorer
• 0
3
votes
6
replies
1.1k
views
Integer overflow issue with ChIPQC
ChIPQC
Rstudio
updated 3.1 years ago by
Martin Morgan
25k • written 3.1 years ago by
Nitesh Kumar Singh
▴ 30
1
vote
8
replies
2.0k
views
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2
null
summarizedexperiment
rstudio
updated 3.1 years ago by
Martin Morgan
25k • written 3.1 years ago by
200dumplings
• 0
0
votes
0
replies
1.2k
views
Error in contrasts<-(tmp, value = contr.funs[1 + isOF[nn]]) : contrasts can be applied only to factors with 2 or more levels
software error
ballgown
rstudio
R
stattest
3.3 years ago
fatimarasool135
• 0
2
votes
3
replies
705
views
make TxDb from list of genes
R
maketxdbfrombiomart
maketxdbfromgranges
rstudio
ensembl
3.7 years ago
rtwest
• 0
0
votes
4
replies
992
views
New computer won't install DESeq2
deseq2
rstudio
install error
updated 3.8 years ago by
Michael Love
37k • written 3.8 years ago by
jyoung
• 0
2
votes
2
replies
2.4k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio
heatmap.2
updated 4.0 years ago by
James W. MacDonald
60k • written 4.0 years ago by
austin.taylor
• 0
0
votes
1
reply
654
views
Install Bioconductor package locally/temporarily
R
rstudio
package installation
updated 4.0 years ago by
Martin Morgan
25k • written 4.0 years ago by
ariel
▴ 10
0
votes
1
reply
1.4k
views
DeSeq2 installation on ubuntu fails
deseq2
R
ubuntu
bioconductor
rstudio
updated 4.1 years ago by
Michael Love
37k • written 4.1 years ago by
drumarsohail
• 0
0
votes
0
replies
661
views
Running ASpli on R results in "Error: vector memory exhausted (limit reached?)"
aspli
rstudio
4.2 years ago
arphatak
• 0
1
vote
4
replies
1.1k
views
biomaRt scan error for latest assembly when indicating version Number
biomart
rstudio
ensembl mart
updated 4.4 years ago by
Mike Smith
★ 5.7k • written 4.5 years ago by
mullpaul
• 0
2
votes
4
replies
718
views
R session terminates when trying to load affycoretools package
affycoretools
Rstudio
fatal error
updated 4.4 years ago by
James W. MacDonald
60k • written 4.4 years ago by
biostR
▴ 10
0
votes
2
replies
2.4k
views
Error in file.choose() : file choice cancelled
package development
bioconductor
rstudio
rmarkdown
vignettes
4.7 years ago
clarisbaby
• 0
1
vote
2
replies
828
views
Rstudio session aborts when using read.celfiles()
oligo package
Rstudio
fatal error
microarray
CEL
4.7 years ago
biostR
▴ 10
0
votes
0
replies
896
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
4.9 years ago
Luiz
• 0
0
votes
1
reply
1.6k
views
Trouble installing Bioconductor in R-studio (R version 3.3.1)
bioconductor
rstudio
updated 5.0 years ago by
Martin Morgan
25k • written 5.0 years ago by
yog312
• 0
1
vote
1
reply
3.9k
views
MA plot in R
rstudio
r
plotMA
5.2 years ago
g.k
• 0
0
votes
3
replies
1.8k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio
cummerbund
error
5.2 years ago
mszskb
• 0
0
votes
4
replies
914
views
problem in installing flowclust
rstudio
flowclust
updated 5.2 years ago by
shepherl
3.2k • written 5.2 years ago by
shadhiksk
• 0
0
votes
1
reply
642
views
can a function outliers be applied for a flowframe?
bioconductor
flow cytometry
rstudio
updated 5.2 years ago by
SamGG
▴ 270 • written 5.2 years ago by
shadhiksk
• 0
2
votes
4
replies
977
views
RStudio quits unexpectedly while running DiffBind on R 3.4.0
software error
diffbind
rstudio
abort
quit
updated 5.3 years ago by
Gord Brown
▴ 640 • written 5.3 years ago by
msabbag2
• 0
0
votes
0
replies
687
views
Rstudio crashes when running monocole
monocole
single-cell
rstudio
5.3 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
747
views
Problem with cummeRbund
rstudio
cummerbund
5.4 years ago
sanathoi.guru
• 0
2
votes
1
reply
3.3k
views
Reading fasta file with multiple sequences
multiple sequences
bioconductor
rstudio
seqinr
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
Riot
• 0
3
votes
3
replies
14k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown
rstudio
knitr
5.8 years ago
Jon Bråte
▴ 190
0
votes
4
replies
1.9k
views
Unable to install Rcpp package for genefo
Rcpp
genefo
linux
linux mint
Rstudio
updated 6.0 years ago by
mfox
• 0 • written 6.0 years ago by
anjali.krishna1008
• 0
0
votes
0
replies
1.5k
views
Read Graphviz file .dot in R
r
rstudio
rgraphviz
graphviz
.dot
6.2 years ago
pleaseteachmehowtodoit
• 0
0
votes
2
replies
1.3k
views
Gene symbol annotation not converted for intergenic SNPs with multiple genes
annotation
variantannotation
rstudio
updated 6.4 years ago by
Valerie Obenchain
★ 6.7k • written 6.4 years ago by
noor.suaini
• 0
0
votes
1
reply
828
views
What preprocessing needs to be done on the Experiment datasets
colon
rstudio
golubesets
updated 6.4 years ago by
James W. MacDonald
60k • written 6.4 years ago by
shramanathakur
• 0
0
votes
2
replies
770
views
Error viewing the data set Golub_Merge
golubEsets
rstudio
updated 6.4 years ago by
James W. MacDonald
60k • written 6.4 years ago by
shramanathakur
• 0
1
vote
3
replies
20k
views
Converting first column to rownames
rstudio
6.4 years ago
John
▴ 30
0
votes
5
replies
2.3k
views
New Version of CummeRbund?
cummerbund
rstudio
6.5 years ago
lreiter
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Data input for aracne2regulon function in viper package
by
xlal
• 0
You are right!And may be we should check the gene symbols cause when I open the expression matrix in EXCEL,it will change some genes into m…
Comment: unable to install.packages("spatialLIBD")
by
Leonardo Collado Torres
▴ 1000
All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…
Answer: how to use Rsamtools to parse extra fields from STAR alignment
by
Martin Morgan
25k
The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
by
Delta._.43
▴ 10
Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
by
Alejandro Reyes
★ 1.8k
Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…
Votes
Answer: spot- vs cell-level data access
Answer: unable to install.packages("spatialLIBD")
Comment: unable to install.packages("spatialLIBD")
error running UniProt.ws
Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
Awards
• All
Popular Question
to
Alejandro Reyes
★ 1.8k
Popular Question
to
Leonardo Collado Torres
▴ 1000
Scholar
to
ATpoint
★ 1.4k
Scholar
to
voogd.o
▴ 10
Popular Question
to
Bumble
▴ 10
Locations
• All
France,
18 minutes ago
Germany,
25 minutes ago
France,
39 minutes ago
China,
43 minutes ago
Switzerland,
45 minutes ago
Traffic: 355 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6