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rstudio
•
reset
0
votes
1
reply
112
views
FALSE error when checking a pre made sample data
Rstudio
scRNAseq
DESeq2
updated 5 weeks ago by
ATpoint
★ 3.4k • written 5 weeks ago by
DrFizz
• 0
0
votes
1
reply
184
views
DESeq2 error after installing BiocManager
scRNAseq
RStudio
DESeq2
updated 6 weeks ago by
ATpoint
★ 3.4k • written 6 weeks ago by
DrFizz
• 0
0
votes
2
replies
661
views
Usinig BiocParallel package in R with M1 MAC
RStudio
R
M1
BiocParallel
Mac
updated 8 months ago by
Christian Mertes
• 0 • written 10 months ago by
me.achleitner
• 0
0
votes
1
reply
483
views
Bug: MOFA2 sets an environment variable that breaks knit in RStudio
RStudio
MOFA2
bug
knitr
updated 10 months ago by
James W. MacDonald
63k • written 10 months ago by
Kevin Coombes
▴ 430
0
votes
1
reply
449
views
Issue with installation of a package.
RStudio
flowFDA
updated 11 months ago by
Basti
▴ 720 • written 11 months ago by
kinoshamoodley
• 0
0
votes
14
replies
2.9k
views
GenomeInfoDbData had non-zero exit status
DESeq2
RStudio
GenomeInfoDbData
hadnon-zeroexitstatus
updated 11 months ago by
wshao9
• 0 • written 14 months ago by
JoseR
• 0
4
votes
5
replies
1.4k
views
DESeq2::plotPCA plotting error
RStudio
PCA
DESeq2
written 17 months ago by
960942
• 0
0
votes
0
replies
897
views
function GDCquery_Maf error
rstudio
maftools
17 months ago
misslubblys
• 0
8
votes
9
replies
4.0k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl
Rstudio
ensembldb
AnnotationHub
ensdb
updated 20 months ago by
Hervé Pagès
16k • written 20 months ago by
jon.klonowski
▴ 40
0
votes
3
replies
1.1k
views
Reading large file (15GB) in R
R
Rstudio
Bioconducter
statistics
updated 19 months ago by
Sean Davis
21k • written 20 months ago by
Jitendra
▴ 10
0
votes
0
replies
445
views
Read the first sequence from fasta file - TFBSTool
TFBSTools
FASTA
RStudio
22 months ago
HELEN
• 0
0
votes
1
reply
540
views
TFBSTools and readFASTA
TFBSTools
DNASeqData
readFASTA
DNA
RStudio
updated 22 months ago by
James W. MacDonald
63k • written 22 months ago by
HELEN
• 0
0
votes
0
replies
465
views
TFBSTools- analysis for trascriprion factors
TFBSTools
RStudio
R
23 months ago
HELEN
• 0
1
vote
5
replies
1.6k
views
DESeq2: All samples have 0 counts for all genes. check the counting script
DESeq2
RStudio
24 months ago
Sonia
• 0
0
votes
1
reply
1.9k
views
Unable to Install packages in R
rstudio
updated 2.0 years ago by
James W. MacDonald
63k • written 2.0 years ago by
Fiona
• 0
0
votes
4
replies
2.3k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
2.1 years ago
HELEN
• 0
5
votes
15
replies
7.8k
views
Can't able to install Seurat in Rstudio
Rstudio
Seurat
updated 2.3 years ago by
Kevin Blighe
3.8k • written 2.3 years ago by
KOUSTAV
• 0
1
vote
7
replies
2.1k
views
Error with hclust
dendrogram
hclust
textanalysis
R
RStudio
2.5 years ago • updated 2.4 years ago
Abby
▴ 10
0
votes
1
reply
635
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups
RStudio
DECIPHER
Specificprimers
updated 2.6 years ago by
Erik Wright
▴ 150 • written 2.6 years ago by
noeliaruizalonso23
• 0
1
vote
5
replies
2.9k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw
rtracklayer
http
RStudio
updated 2.8 years ago by
Michael Lawrence
11k • written 2.8 years ago by
Søren
• 0
0
votes
1
reply
685
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub
Shiny
Rstudio
updated 3.6 years ago by
shepherl
3.5k • written 3.6 years ago by
bwiley4
• 0
0
votes
5
replies
1.1k
views
readTranscriptFeatures from genomation
R
Rstudio
Error
readTranscriptFeatures
genomation
updated 3.8 years ago by
altuna akalin
▴ 20 • written 3.8 years ago by
hwaterma
• 0
2
votes
1
reply
6.3k
views
Error: status was 'SSL connect error'
bioconductor
proxy
macOS
R
RStudio
updated 3.9 years ago by
Martin Morgan
25k • written 3.9 years ago by
mcall
▴ 20
0
votes
5
replies
1.3k
views
Using RStudio AMI with localhost
RStudio
AWS
AMI
4.2 years ago
bio-explorer
• 0
3
votes
6
replies
1.5k
views
Integer overflow issue with ChIPQC
ChIPQC
Rstudio
updated 4.2 years ago by
Martin Morgan
25k • written 4.2 years ago by
Nitesh Kumar Singh
▴ 30
1
vote
8
replies
2.4k
views
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2
null
summarizedexperiment
rstudio
updated 4.3 years ago by
Martin Morgan
25k • written 4.3 years ago by
200dumplings
• 0
0
votes
0
replies
1.5k
views
Error in contrasts<-(tmp, value = contr.funs[1 + isOF[nn]]) : contrasts can be applied only to factors with 2 or more levels
software error
ballgown
rstudio
R
stattest
4.4 years ago
fatimarasool135
• 0
2
votes
4
replies
1.2k
views
make TxDb from list of genes
R
maketxdbfrombiomart
maketxdbfromgranges
rstudio
ensembl
updated 5 months ago by
Shreyash
• 0 • written 4.8 years ago by
rtwest
• 0
0
votes
4
replies
1.4k
views
New computer won't install DESeq2
deseq2
rstudio
install error
updated 4.9 years ago by
Michael Love
40k • written 4.9 years ago by
jyoung
• 0
2
votes
2
replies
3.4k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio
heatmap.2
updated 5.1 years ago by
James W. MacDonald
63k • written 5.1 years ago by
austin.taylor
• 0
0
votes
1
reply
1.0k
views
Install Bioconductor package locally/temporarily
R
rstudio
package installation
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
ariel
▴ 10
0
votes
1
reply
1.7k
views
DeSeq2 installation on ubuntu fails
deseq2
R
ubuntu
bioconductor
rstudio
updated 5.2 years ago by
Michael Love
40k • written 5.2 years ago by
drumarsohail
• 0
0
votes
0
replies
860
views
Running ASpli on R results in "Error: vector memory exhausted (limit reached?)"
aspli
rstudio
5.3 years ago
arphatak
• 0
1
vote
4
replies
1.4k
views
biomaRt scan error for latest assembly when indicating version Number
biomart
rstudio
ensembl mart
updated 5.6 years ago by
Mike Smith
★ 6.1k • written 5.6 years ago by
mullpaul
• 0
2
votes
4
replies
1.0k
views
R session terminates when trying to load affycoretools package
affycoretools
Rstudio
fatal error
updated 5.6 years ago by
James W. MacDonald
63k • written 5.6 years ago by
biostR
▴ 10
0
votes
2
replies
3.2k
views
Error in file.choose() : file choice cancelled
package development
bioconductor
rstudio
rmarkdown
vignettes
5.8 years ago
clarisbaby
• 0
1
vote
2
replies
1.1k
views
Rstudio session aborts when using read.celfiles()
oligo package
Rstudio
fatal error
microarray
CEL
5.9 years ago
biostR
▴ 10
0
votes
0
replies
1.3k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
6.0 years ago
Luiz
• 0
0
votes
1
reply
1.8k
views
Trouble installing Bioconductor in R-studio (R version 3.3.1)
bioconductor
rstudio
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
yog312
• 0
1
vote
1
reply
4.5k
views
MA plot in R
rstudio
r
plotMA
6.3 years ago
g.k
• 0
0
votes
3
replies
2.3k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio
cummerbund
error
6.3 years ago
mszskb
• 0
0
votes
4
replies
1.2k
views
problem in installing flowclust
rstudio
flowclust
updated 6.3 years ago by
shepherl
3.5k • written 6.3 years ago by
shadhiksk
• 0
0
votes
1
reply
956
views
can a function outliers be applied for a flowframe?
bioconductor
flow cytometry
rstudio
updated 6.3 years ago by
SamGG
▴ 300 • written 6.3 years ago by
shadhiksk
• 0
2
votes
4
replies
1.4k
views
RStudio quits unexpectedly while running DiffBind on R 3.4.0
software error
diffbind
rstudio
abort
quit
updated 6.4 years ago by
Gord Brown
▴ 650 • written 6.4 years ago by
msabbag2
• 0
0
votes
0
replies
896
views
Rstudio crashes when running monocole
monocole
single-cell
rstudio
6.4 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
970
views
Problem with cummeRbund
rstudio
cummerbund
6.5 years ago
sanathoi.guru
• 0
2
votes
1
reply
4.0k
views
Reading fasta file with multiple sequences
multiple sequences
bioconductor
rstudio
seqinr
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
Riot
• 0
3
votes
3
replies
15k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown
rstudio
knitr
6.9 years ago
Jon Bråte
▴ 250
0
votes
4
replies
2.5k
views
Unable to install Rcpp package for genefo
Rcpp
genefo
linux
linux mint
Rstudio
updated 7.1 years ago by
mfox
• 0 • written 7.1 years ago by
anjali.krishna1008
• 0
0
votes
0
replies
1.8k
views
Read Graphviz file .dot in R
r
rstudio
rgraphviz
graphviz
.dot
7.3 years ago
pleaseteachmehowtodoit
• 0
50 results • Page
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Answer: ukb Chromosomal position information was converted into SNPS
by
James W. MacDonald
63k
In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…
Comment: T.fit function of maSigPro returns error message
by
hanna.g
• 0
Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …
Answer: Deseq2, enrichGO and ensembl ID
by
James W. MacDonald
63k
1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…
Comment: Doubts regarding Pathview
by
loyedbend2811
• 0
I thoroughly enjoyed reading your essay, and it was quite beneficial to me. Please join me in [monopoly online][1] if you have the time. …
Comment: ukb Chromosomal position information was converted into SNPS
by
wenbo
• 0
Hi, I downloaded uk biobank data, but I don't know how to use R to convert chromosome position information to rs
Votes
Answer: MDS plot edgeR
A: legend with gradient in ComplexHeatmap
Comment: comparing contrasts in edger/lima using makeContrasts function
Answer: comparing contrasts in edger/lima using makeContrasts function
Answer: Differential expression analysis with only FPKM matrix available from total newb
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