Visualizing Structural variants
1
0
Entering edit mode
@abhishek-pratap-4927
Last seen 5.5 years ago
United States

Hi group

 

Just wanted to learn from your experience on few select visualizing structural variants we found in our long insert libraries for ~20 samples.

The goal is not to do global picture coz it get messy/uninformative pretty soon but to zoom in on few select genes. Any tools / examples where  I can highlight SV(del, dup, translocation, inversion) in a particular gene along with coverage would be an awesome start.

Any example code would be awesome too.

 

Cheers!

-Abhi

visualization SV • 971 views
ADD COMMENT
1
Entering edit mode
@vincent-j-carey-jr-4
Last seen 6 weeks ago
United States

package intansv might be a start

Login before adding your answer.

Traffic: 334 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6