Question: Visualizing Structural variants
gravatar for Abhishek Pratap
4.5 years ago by
United States
Abhishek Pratap170 wrote:

Hi group


Just wanted to learn from your experience on few select visualizing structural variants we found in our long insert libraries for ~20 samples.

The goal is not to do global picture coz it get messy/uninformative pretty soon but to zoom in on few select genes. Any tools / examples where  I can highlight SV(del, dup, translocation, inversion) in a particular gene along with coverage would be an awesome start.

Any example code would be awesome too.




visualization sv • 804 views
ADD COMMENTlink modified 4.5 years ago by Vincent J. Carey, Jr.6.3k • written 4.5 years ago by Abhishek Pratap170
Answer: Visualizing Structural variants
gravatar for Vincent J. Carey, Jr.
4.5 years ago by
United States
Vincent J. Carey, Jr.6.3k wrote:

package intansv might be a start

ADD COMMENTlink written 4.5 years ago by Vincent J. Carey, Jr.6.3k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 385 users visited in the last hour