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Question: Visualizing Structural variants
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gravatar for Abhishek Pratap
2.6 years ago by
United States
Abhishek Pratap170 wrote:

Hi group

 

Just wanted to learn from your experience on few select visualizing structural variants we found in our long insert libraries for ~20 samples.

The goal is not to do global picture coz it get messy/uninformative pretty soon but to zoom in on few select genes. Any tools / examples where  I can highlight SV(del, dup, translocation, inversion) in a particular gene along with coverage would be an awesome start.

Any example code would be awesome too.

 

Cheers!

-Abhi

ADD COMMENTlink modified 2.6 years ago by Vincent J. Carey, Jr.6.2k • written 2.6 years ago by Abhishek Pratap170
1
gravatar for Vincent J. Carey, Jr.
2.6 years ago by
United States
Vincent J. Carey, Jr.6.2k wrote:

package intansv might be a start

ADD COMMENTlink written 2.6 years ago by Vincent J. Carey, Jr.6.2k
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