I have a question regarding UCSC Genome. I have gone through the process of using galaxy (tophat, cuff diff, etc) and I used the mouse Dec2011 mm10 as my annotation file. What I currently have are all the NM_#### and NR_#### for the genes, but I need the gene names. I was able to get a .csv that had quite a few, so I just used R to search (grep) and match the names for me, but the file does not have all of them.
So I have installed the TxDb.Mmusculus.UCSC.mm10.knownGene package, but can't figure out how to do this very simple task. I'm hoping there is a function that allows me to input, for example, NM_001001130, and the gene name Zfp85 would be returned.
Thank you in advance for you time and expertise!