help with read.FCS clipping data
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@where_is_the_mustard-7761
Last seen 9.0 years ago
United States

Hi there,

I've found that while reading an FCS file, the time parameter (double) gets limited to 262144.0 (= 2^18) and in my case the this parameter goes much higher than this number.

Is there a way to get a flowframe to have a larger data type? or can I change the default number of bits in a double throughout R?

I have tested this same file in matlab and have not had the same error, so I know that the FCS file is correct.

I can send you the FCS file if you want to take a look for yourself.  

flowcore • 818 views
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I created an issue in github https://github.com/RGLab/flowCore/issues/37

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Jiang, Mike ★ 1.3k
@jiang-mike-4886
Last seen 2.6 years ago
(Private Address)

With latest flowCore 1.35.5 in devel branch, you should be able to turn the truncation off by

x <- read.FCS(file.name, truncate_max_range = FALSE)
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