Showing : flowcore • reset
0
votes
1
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171
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Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 7 days ago by ★ 1.3k • written 5 months ago by • 0
0
votes
1
reply
194
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how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 7 days ago by ★ 1.3k • written 4 months ago by • 0
0
votes
1
reply
156
views
Re-naming $PnS parameters
flowCore
updated 6 months ago by ▴ 270 • written 6 months ago by • 0
1
vote
3
replies
214
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Getting number of datasets with flowCore
flowCore
updated 6 months ago by ▴ 270 • written 6 months ago by • 0
1
vote
1
reply
170
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 7 months ago by ▴ 270 • written 7 months ago by • 0
0
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0
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120
views
flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
10 months ago GFM ▴ 20
1
vote
6
replies
370
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 10 months ago by ▴ 270 • written 10 months ago by • 0
0
votes
7
replies
521
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 11 months ago by ★ 1.3k • written 11 months ago by ▴ 30
4
votes
8
replies
498
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 3 months ago by • 0 • written 16 months ago by ▴ 20
0
votes
1
reply
159
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 16 months ago by ▴ 280 • written 18 months ago by • 0
2
votes
2
replies
308
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 17 months ago by ▴ 280 • written 17 months ago by ▴ 20
4
votes
5
replies
318
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 17 months ago by ▴ 280 • written 17 months ago by • 0
0
votes
0
replies
114
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
19 months ago palffy.karoly • 0
0
votes
2
replies
180
views
flowCore not displaying FL gates
flowCore
updated 20 months ago by ★ 1.3k • written 20 months ago by • 0
2
votes
4
replies
303
views
Mathematical operations in FCS file
flowCore flow cytometry
21 months ago chandra.swarnendu • 0
0
votes
1
reply
397
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 22 months ago by ★ 1.3k • written 23 months ago by ▴ 10
1
vote
3
replies
351
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
2.0 years ago cahyasu88 • 0
1
vote
0
replies
298
views
Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
2.1 years ago nina.hahn • 0
3
votes
2
replies
324
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
2.2 years ago Brent.OCarrigan • 0
1
vote
2
replies
407
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
2.2 years ago rdlr • 0
0
votes
1
reply
256
views
Issue creating transformed filter in flowCore
flowCore
updated 2.2 years ago by ▴ 280 • written 2.2 years ago by • 0
4
votes
4
replies
450
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 2.3 years ago by ▴ 280 • written 2.3 years ago by ▴ 70
2
votes
1
reply
634
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 2.3 years ago by ▴ 280 • written 2.3 years ago by • 0
2
votes
3
replies
485
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 2.3 years ago by ▴ 280 • written 2.3 years ago by • 0
1
vote
4
replies
467
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 2.4 years ago by ▴ 280 • written 2.4 years ago by ▴ 70
0
votes
0
replies
242
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
2.5 years ago kovacik • 0
1
vote
5
replies
555
views
Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
2.5 years ago carlos.x.martinez-fleites • 0
1
vote
2
replies
383
views
gatingML examples needed
flowCore flowUtils gatingML
updated 2.6 years ago by ★ 1.3k • written 2.6 years ago by ▴ 10
1
vote
6
replies
965
views
flowCore: uneven number of tokens / The last keyword is dropped.
flowCore
updated 2.6 years ago by ▴ 270 • written 2.6 years ago by • 0
2
votes
5
replies
521
views
flowCore filterSummary toTable() function not working
flowCore flowcore flow cytometry
updated 2.6 years ago by ▴ 280 • written 2.6 years ago by • 0
0
votes
1
reply
399
views
Error after assignPrelim(), CyTOF compenstation
CATALYST flowCore assignPrelim Error in vapply read.FCS
2.6 years ago j.krop • 0
1
vote
1
reply
631
views
read.FCS memory limit? - $PnRNAis larger than R's numeric limit
flowCore read.FCS memory_limit
2.7 years ago lloyd.izard ▴ 80
0
votes
1
reply
493
views
flowDensity loop on flowSet
flowdensity flowcore for loop
updated 2.7 years ago by 0 • written 2.9 years ago by • 0
0
votes
2
replies
464
views
flowCore: retain raw data in the flowset after transformation
flow cytometry flowcore
updated 2.7 years ago by ★ 1.3k • written 2.7 years ago by • 0
3
votes
3
replies
855
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
updated 3.0 years ago by ★ 1.3k • written 3.9 years ago by ▴ 10
1
vote
2
replies
459
views
Newbie question: how do I address a subset obtained by split()?
flowStats newbie split subset flowCore
3.1 years ago yulia.chupalova • 0
3
votes
3
replies
1.7k
views
Modifying or writing a FCS file in R using the FlowCore package
FCS flowframe flowcore flow cytometry
3.1 years ago vonskopnik ▴ 10
1
vote
6
replies
606
views
Cannot install flowViz package because dependency flowCore cannot be found, however flowCore has just been installed.
flowViz flowCore package installation
updated 3.1 years ago by 25k • written 3.1 years ago by ▴ 10
0
votes
1
reply
390
views
How do I apply a singleParameterTransform to a number of parameters in a flowFrame like the standard transforms?
flowcore flow cytometry flowdensity hyperlog transformation
updated 3.1 years ago by ★ 1.3k • written 3.1 years ago by • 0
0
votes
2
replies
406
views
Loading Flow Files
flowcore list.files
3.1 years ago nicolette.sipperly • 0
0
votes
1
reply
336
views
flowCore parameters( ) function does not appear to exist
flowcore
3.2 years ago neilruthen • 0
1
vote
3
replies
2.6k
views
Load FlowCore to read .fcs files in R
flowcore flow cytometry R
3.2 years ago Bayram Sarilmaz • 0
0
votes
2
replies
693
views
Beginner & HowTo-flowCore-Example
flowcore
updated 3.3 years ago by 58k • written 3.3 years ago by • 0
2
votes
5
replies
828
views
How to identify multiple datasets in FCS file through flowCore
flowcore flow cytometry dataset
3.3 years ago vinko.tosevski • 0
2
votes
4
replies
629
views
trouble showing a polygon gate using geom_gate
flowcore ggcyto
updated 3.5 years ago by ★ 1.3k • written 3.5 years ago by ▴ 10
0
votes
3
replies
801
views
Spillover matrix in FlowCore doesn't match Compensation Matrix from FlowJo
spillover flowcore compensation matrix bioconductor flow cytometry
3.6 years ago Samuel Ahuno • 0
2
votes
4
replies
1.3k
views
Exporting FCS from FlowJo for flowCore & cytofkit analysis
flowcore flow cytometry cytofkit
updated 3.6 years ago by ▴ 270 • written 3.6 years ago by ▴ 10
1
vote
2
replies
505
views
How do you re-order .fcs files in a flowSet?
flowcore flowset bioconductor flow cytometry fcs file
3.6 years ago Samuel Ahuno • 0
0
votes
6
replies
1.3k
views
spillover::flowCore problem: Error in match(unstained, sampleNames(x))
flowcore spillover flowcytometry
updated 3.6 years ago by • 0 • written 5.6 years ago by • 0
0
votes
1
reply
510
views
spillover::flowCore problem: Error: Unable to match stains with controls based on intensity: a single stain matches to several multiple controls.
flowCore spillover compensation matrix bioconductor flow cytometry
3.6 years ago Samuel Ahuno • 0
50 results • Page 1 of 1
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Comment: Correct annotation of DGEList object from edgeR package regarding an RNA-Seq dat by IIart.hubII • 0
What is "coad_clear" in this case? What data have you allotted to it? Can you please share the whole code? Or can anyone answer this questi…
Comment: GenomicScores package: availableGScores and getGScores functions not working by Robert Castelo ★ 2.7k
hi, Indeed you were using an outdated version of the package. Regarding how to install current release version, please read first carefull…
Answer: Unable to install Bioconductor packages by shepherl 2.8k
This normally occurs when R was installed with a different account or an admin account. Unless on this account you won't be able to update…
Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0
I tried to install the latest version of GenomicScores (2.4.0) by downloading the tar.gz and running `install.packages('GenomicScores_2.4.0…
Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0
Thanks for the quick response. Below is my sessionInfo R version 3.6.2 (2019-12-12) Platform: x86_64-apple-darwin15.6.0 (64-bit) …
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