Hi I am having an issue installing the flow cytometry package flowClust on my Ubuntu 14 system.

Other packages such as SamSPECTRAL install fine.

I get this error at the end of the install process which may help:

Commands:

source("http://bioconductor.org/biocLite.R")

biocLite("flowClust")

> library(flowClust)
Error in library(flowClust) : there is no package called ‘flowClust’

installing to /home/gareth/R/i686-pc-linux-gnu-library/3.1/flowClust/libs
** R
** data
** inst
** preparing package for lazy loading
Warning: S3 methods ‘print.BayesFactor’, ‘summary.BayesFactor’, ‘plot.qrssvs’, ‘print.qrssvs’, ‘print.summary.qrssvs’, ‘summary.qrssvs’ were declared in NAMESPACE but not found
Error in library.dynam(lib, package, package.lib) : 
  shared object ‘MCMCpack.so’ not found
ERROR: lazy loading failed for package ‘flowClust’
* removing ‘/home/gareth/R/i686-pc-linux-gnu-library/3.1/flowClust’
Warning in install.packages :
  installation of package ‘/home/gareth/Downloads/flowClust_3.6.0.tar.gz’ had non-zero exit status

SessionInfo() output:

R version 3.1.3 (2015-03-09)
Platform: i686-pc-linux-gnu (32-bit)
Running under: Ubuntu 14.04.2 LTS

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C               LC_TIME=en_GB.UTF-8       
 [4] LC_COLLATE=en_GB.UTF-8     LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8   
 [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.16.5

loaded via a namespace (and not attached):
[1] tools_3.1.3

Can anyone help me. I'm very new to R and its packages. I do all my work in R Studio.

Thanks in advance

Gareth, University of Manchester

Reinstalling the MCMCpack had done the trick. Thanks for your help.