Showing : install • reset
0
votes
6
replies
1.6k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 23 days ago by ★ 3.6k • written 12 months ago by • 0
0
votes
0
replies
107
views
Version map cannot be validated - not mapping to new bioconductor website
Install
27 days ago Alexander • 0
2
votes
5
replies
387
views
SparseArray unable to install on Bioc 3.18
DESeq2 SummarizedExperiment SparseArray Install DelayedArray
updated 4 weeks ago by 41k • written 4 weeks ago by • 0
0
votes
7
replies
442
views
Unable to install RefPlus - R=4.3.1, BiocManager=3.18
Install instal
updated 5 weeks ago by 64k • written 5 weeks ago by • 0
0
votes
1
reply
358
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 4 months ago by ★ 6.2k • written 4 months ago by • 0
3
votes
5
replies
678
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 4 months ago by 6.7k • written 4 months ago by ▴ 20
0
votes
2
replies
406
views
msa Installation failed - please help
Install msa
6 months ago Ido • 0
1
vote
4
replies
5.3k
views
Error loading impute(): '/usr/lib/libgfortran.5.dylib' (no such file)
Install impute
updated 7 months ago by • 0 • written 22 months ago by • 0
0
votes
1
reply
2.3k
views
package ‘Bioconductor’ is not available for Bioconductor version '3.16'
Bioconductor Install
updated 7 months ago by ★ 3.6k • written 7 months ago by • 0
0
votes
1
reply
412
views
error in install immunedeconv
Install
updated 9 months ago by ▴ 720 • written 9 months ago by • 0
1
vote
2
replies
618
views
Query regarding error in installation of "microbiomeutilities" R package
MicrobiomeData R microbiomeutilities Install
9 months ago abhisek001 • 0
1
vote
1
reply
1.6k
views
packages not installing from sources the package which needs compilation
Install
updated 11 months ago by 64k • written 11 months ago by • 0
2
votes
4
replies
1.6k
views
question regarding installation of "enrichplot" with BiocManager
R BiocManager install clusterProfiler GO
written 12 months ago by • 0
1
vote
7
replies
1.1k
views
query regarding error in installation of "goseq" R bioconductor package
R Bioconductor Install
updated 12 months ago by 3.6k • written 12 months ago by • 0
1
vote
3
replies
4.5k
views
Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 11 months ago by 3.6k • written 12 months ago by • 0
4
votes
17
replies
6.6k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 13 months ago by 41k • written 22 months ago by • 0
0
votes
2
replies
1.2k
views
Cannot install bioconductor DESeq2 package on M1 mac ... any advice?
DESeq2 Install r
updated 13 months ago by ★ 3.6k • written 13 months ago by • 0
1
vote
20
replies
2.8k
views
Deseq2 installed, but there is no package called ‘Biostrings’
DESeq2 Install
updated 14 months ago by 64k • written 14 months ago by • 0
1
vote
3
replies
810
views
I can't upgrade to version 3.15 in R
Install
updated 14 months ago by 49k • written 14 months ago by • 0
1
vote
1
reply
437
views
Downloading DESeq package manually
DESeq2 Install
updated 14 months ago by ▴ 740 • written 14 months ago by • 0
1
vote
1
reply
636
views
Unable to install "scruff" with BiocManager::install()
scruff Install ShortRead
updated 15 months ago by 3.6k • written 15 months ago by • 0
0
votes
1
reply
884
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 18 months ago by 16k • written 18 months ago by • 0
2
votes
2
replies
806
views
rtracklayer S.h
install
19 months ago gibran • 0
0
votes
1
reply
958
views
trouble installing DESeq2
install packages R DESeq2
updated 19 months ago by 3.6k • written 19 months ago by • 0
0
votes
2
replies
2.4k
views
non-zero exit status when trying to install a package
Install
19 months ago BioC123 • 0
1
vote
3
replies
967
views
Bioconductor installation error
Install
updated 19 months ago by • 0 • written 19 months ago by ▴ 10
0
votes
2
replies
1.1k
views
Installation problems
Install
updated 19 months ago by 3.6k • written 19 months ago by • 0
0
votes
2
replies
804
views
Forking a package/install from source
install package fork bugfix
updated 20 months ago by 64k • written 20 months ago by • 0
0
votes
2
replies
1.6k
views
AnnotationHub installation ‘Rcpp’ 1.0.6 is already loaded, but >= 1.0.7 is required
AnnotationHub Install
updated 21 months ago by 3.6k • written 21 months ago by • 0
2
votes
1
reply
3.2k
views
Bioconductor Package Installation
install TxDb.Hsapiens.UCSC.hg38.knownGene
21 months ago Theresa ▴ 20
1
vote
2
replies
696
views
How to install R package from GitHub
Install github
updated 21 months ago by 3.6k • written 21 months ago by • 0
0
votes
3
replies
1.1k
views
Warning messages during intallation of XCMS
xcms Install
updated 21 months ago by 64k • written 21 months ago by • 0
0
votes
3
replies
1.6k
views
gpart installation fails: gpart_cpp.cpp:622:42: error: ‘PI’ was not declared in this scope
install gpart renv
updated 21 months ago by • 0 • written 22 months ago by • 0
3
votes
5
replies
8.4k
views
installing synapter package: package is not available for Bioconductor version '3.14'
synapter Install
21 months ago czan ▴ 10
3
votes
2
replies
3.5k
views
Install package without updating dependent package
Install AnnotationForge
2.0 years ago 亮 • 0
5
votes
4
replies
2.2k
views
XVector installation fails because zlib.h is not found
XVector docker Install
2.1 years ago • updated 2.0 years ago RobKo ▴ 10
0
votes
3
replies
1.6k
views
Bioconductor 3.13 installer reports that affyQCReport is not available
Install 3.13 affyQCReport
updated 2.1 years ago by ▴ 10 • written 2.2 years ago by • 0
0
votes
2
replies
1.2k
views
Installing DESEq2 Error: unable to access index for repository https://bioconductor.org
Install Bioconductor DESeq2
2.2 years ago • updated 2.1 years ago ladypurrsia ▴ 10
2
votes
4
replies
2.3k
views
BiocManager::install() does not work anymore
Install PackageType
updated 2.2 years ago by 3.6k • written 2.2 years ago by • 0
0
votes
1
reply
854
views
install GenomicFeatures fail
GenomicFeatures install
updated 2.3 years ago by 64k • written 2.3 years ago by ▴ 80
0
votes
5
replies
1.1k
views
installation error: Error in setIs(class2, cli, extensionObject = obji, doComplete = FALSE and setClass() for chromVAR and VariantAnnotation
Install VariantAnnotation Bioconductor chromVAR
updated 2.3 years ago by 6.7k • written 2.3 years ago by • 0
1
vote
1
reply
816
views
simplifyEnrichment install error
package Rversion Install simplifyEnrichment
updated 2.7 years ago by 3.6k • written 2.7 years ago by ▴ 10
0
votes
2
replies
1.1k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error DESeq2 Install
updated 2.8 years ago by 64k • written 2.8 years ago by • 0
1
vote
4
replies
1.3k
views
Failing to install DEP package. Some strange error.
R Bioconductor Install DEP
2.8 years ago tpm • 0
2
votes
1
reply
700
views
Problem with pd.hta.2.0 package installation
Install
updated 2.8 years ago by 64k • written 2.8 years ago by • 0
0
votes
1
reply
776
views
error during installation of 'DEseq2' package
DESeq2 Install
updated 2.8 years ago by 16k • written 2.8 years ago by • 0
0
votes
1
reply
1.9k
views
BiocManager::install("EnsDb.Hsapiens.v75") install fails with non-zero exit status
biocmanager Install
updated 2.9 years ago by 64k • written 2.9 years ago by ▴ 10
0
votes
4
replies
1.2k
views
GO.db package can't be installed
install GO.db
updated 2.9 years ago by 25k • written 2.9 years ago by • 0
0
votes
1
reply
1.6k
views
Install using BiocManager::install() doesn't work in docker container
Bioconductor docker Install
updated 3.0 years ago by 25k • written 3.0 years ago by • 0
0
votes
2
replies
1.4k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck Install martini
3.0 years ago hector.climente • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE) by James W. MacDonald 64k
There are two types of probes used by Illumina. The type I probes bind directly to the CpG site and have two different probes (one for a me…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by Michael Love 41k
Then for the remaining genes that you don't think are DE, just plot like this: ``` dds_sub <- dds[,dds$condition %in% c("x","y")] dropleve…
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by samer • 0
yes i turned it off @mikelove
Answer: autonomics: example("read_somascan", package = "autonomics") fails, but not on B by Mike Smith ★ 6.2k
It looks like `autonomics` uses `BiocFileCache` to create a local copy of the data and save repeat downloading. Given the (relatively) rec…
Answer: Small RNA-seq Analysis DESEQ2 : Unexpected Significance by Michael Love 41k
I notice you are using `betaPrior=TRUE`. We have set to default and recommended `betaPrior=FALSE` for many years (since version 1.16 in 201…
Votes
Answer: WGCNA documentation not available
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Answer: Correct the batch effect in methylation analysis in R
Comment: Why is DMRcate not available for Bioconductor version 3.18?
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