Question: ape - delete bootstrap values (node.labels) less than a certain value
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gravatar for wd
4.4 years ago by
wd30
Germany
wd30 wrote:

Hi I'm using the R packag ape to edit my newick trees. For my newick tree, I would like to remove values less than 80.

I'm able to  remove ALL labels using the following script:

library(ape)
tree <- read.tree("tree.nwk")
tree$node.label <- NULL
write.tree(tree, file = "tree_no_bootstrap.nwk")

...but somehow cannot find how to only delete bootstrap values less than 80.

Any advice would be much appreciated.

WD

ADD COMMENTlink written 4.4 years ago by wd30

Mmm, ape is not a Bioconductor package, so you may not get help here.

ADD REPLYlink modified 4.4 years ago • written 4.4 years ago by Diego Diez750
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