ape - delete bootstrap values (node.labels) less than a certain value
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wd ▴ 30
@wd-7410
Last seen 4.6 years ago
Germany

Hi I'm using the R packag ape to edit my newick trees. For my newick tree, I would like to remove values less than 80.

I'm able to  remove ALL labels using the following script:

library(ape)
tree <- read.tree("tree.nwk")
tree$node.label <- NULL
write.tree(tree, file = "tree_no_bootstrap.nwk")

...but somehow cannot find how to only delete bootstrap values less than 80.

Any advice would be much appreciated.

WD

ape bootstrap node phylogenetic tree • 3.9k views
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Mmm, ape is not a Bioconductor package, so you may not get help here.

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