Biostar Bootstrap

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salmon rna-seq swish bootstrap fishpond

updated 4 months ago by Michael Love 37k • written 4 months ago by samuelcjx • 0

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salmon tximport bootstrap

updated 2.3 years ago by julia.jefferson23 • 0 • written 2.3 years ago by Cindy • 0

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tree bootstrap dgelist plotmds

4.3 years ago Larry K. • 0

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jackknifing R microarray bootstrap

5.0 years ago bhgyu ▴ 30

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GSVM bootstrap snow

updated 5.5 years ago by Robert Castelo ★ 2.9k • written 5.5 years ago by mforde84 ▴ 20

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ape bootstrap node phylogenetic tree

7.1 years ago wd ▴ 30

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deseq2 bootstrap differential expression

updated 7.3 years ago by Michael Love 37k • written 7.3 years ago by David Eccles (gringer) ▴ 30

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Answer: how do singleton samples contribute to dispersion estimate in DESeq2? by Michael Love 37k

For that type of design, they do not really just much information about the dispersion. But the dispersion estimates are MLE and not based …

Answer: Should 0 values for gene counts be removed prior to ssGSEA/GSVA analysis? by Robert Castelo ★ 2.9k

Hi, we advice to remove lowly-expressed genes in the same way you would do it before a differential expression analysis. This has been prev…

Answer: Error message: Could not find function "DESeqDataSetFromMatrix" by James W. MacDonald 60k

Any time you see an error that ends with ``` could not find function "<function name goes here>" ``` it means that you haven't load…

Comment: Seeking help in multifactor differential gene expression analysis using DESeq2. by ac.mainul.mmb • 0

Thanks for your kind reply. Those genes belong to HSP20, Suppose to have high expression under HT but if we look into the table its has hig…

Answer: Seeking help in multifactor differential gene expression analysis using DESeq2. by swbarnes2 ★ 1.1k

Those look like different results to me. It's not at all clear why you are so sure it's wrong. Have you eyeballed to expression of those …

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XVector installation fails because zlib.h is not found

A: what is fitProbeLevelModel()? doing

Answer: How fix lines of dendrogram that overlap in the column portion of a heatmap?

how do singleton samples contribute to dispersion estimate in DESeq2?

Answer: Combine GRanges(List) to a single GRanges with unified breakpoints

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