Bioconductor Bootstrap

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salmon rna-seq swish bootstrap fishpond

updated 19 months ago by Michael Love 40k • written 19 months ago by samuelcjx • 0

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834

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salmon tximport bootstrap

updated 3.5 years ago by julia.jefferson23 • 0 • written 3.5 years ago by Cindy • 0

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739

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tree bootstrap dgelist plotmds

5.5 years ago Larry K. • 0

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761

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jackknifing R microarray bootstrap

6.2 years ago bhgyu ▴ 30

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GSVM bootstrap snow

updated 6.7 years ago by Robert Castelo ★ 3.0k • written 6.7 years ago by mforde84 ▴ 20

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ape bootstrap node phylogenetic tree

8.3 years ago wd ▴ 30

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deseq2 bootstrap differential expression

updated 8.5 years ago by Michael Love 40k • written 8.5 years ago by David Eccles (gringer) ▴ 30

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Comment: Problems with FLOWAI by SHASHI • 0

please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA

Comment: DataFrame Construction With Non-standard Column by Hervé Pagès 16k

SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…

Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu by swbarnes2 ★ 1.3k

The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…

Answer: Remove duplicates of colData in TreeSummarizedExperiment by Michael Love 40k

Copying my code from Slack for posterity. James' code is more streamlined for this step I think. ``` # make a dataset that has duplicate s…

Comment: DataFrame Construction With Non-standard Column by James W. MacDonald 63k

Oh, ok. I understand. Technically both should work according to what the help page for `DataFrame` says (both `SimpleList` and `list` have …

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A: LIMMA dupcor() function time issue.

Answer: Further analysis after limma regression output

A: collapseReplicates in DESeq2

Answer: DataFrame Construction With Non-standard Column

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