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bootstrap
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Two Genotypes Four Treatments RNA-seq Analysis
salmon
rna-seq
swish
bootstrap
fishpond
updated 4 months ago by
Michael Love
37k • written 4 months ago by
samuelcjx
• 0
0
votes
6
replies
430
views
tximport lose transcript names with Salmon bootstrap
salmon
tximport
bootstrap
updated 2.3 years ago by
julia.jefferson23
• 0 • written 2.3 years ago by
Cindy
• 0
0
votes
0
replies
484
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
4.3 years ago
Larry K.
• 0
0
votes
0
replies
555
views
Jackknifing/bootstrapping input and output question
jackknifing
R
microarray
bootstrap
5.0 years ago
bhgyu
▴ 30
1
vote
7
replies
877
views
[GSVM] bootstrapping error
GSVM
bootstrap
snow
updated 5.5 years ago by
Robert Castelo
★ 2.9k • written 5.5 years ago by
mforde84
▴ 20
0
votes
1
reply
2.8k
views
ape - delete bootstrap values (node.labels) less than a certain value
ape
bootstrap
node
phylogenetic
tree
7.1 years ago
wd
▴ 30
0
votes
1
reply
1.1k
views
DESeq2 -- Bootstrap subsampling to estimate distribution of expression
deseq2
bootstrap
differential expression
updated 7.3 years ago by
Michael Love
37k • written 7.3 years ago by
David Eccles (gringer)
▴ 30
7 results • Page
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Answer: how do singleton samples contribute to dispersion estimate in DESeq2?
by
Michael Love
37k
For that type of design, they do not really just much information about the dispersion. But the dispersion estimates are MLE and not based …
Answer: Should 0 values for gene counts be removed prior to ssGSEA/GSVA analysis?
by
Robert Castelo
★ 2.9k
Hi, we advice to remove lowly-expressed genes in the same way you would do it before a differential expression analysis. This has been prev…
Answer: Error message: Could not find function "DESeqDataSetFromMatrix"
by
James W. MacDonald
60k
Any time you see an error that ends with ``` could not find function "<function name goes here>" ``` it means that you haven't load…
Comment: Seeking help in multifactor differential gene expression analysis using DESeq2.
by
ac.mainul.mmb
• 0
Thanks for your kind reply. Those genes belong to HSP20, Suppose to have high expression under HT but if we look into the table its has hig…
Answer: Seeking help in multifactor differential gene expression analysis using DESeq2.
by
swbarnes2
★ 1.1k
Those look like different results to me. It's not at all clear why you are so sure it's wrong. Have you eyeballed to expression of those …
Votes
XVector installation fails because zlib.h is not found
A: what is fitProbeLevelModel()? doing
Answer: How fix lines of dendrogram that overlap in the column portion of a heatmap?
how do singleton samples contribute to dispersion estimate in DESeq2?
Answer: Combine GRanges(List) to a single GRanges with unified breakpoints
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