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bootstrap
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Two Genotypes Four Treatments RNA-seq Analysis
salmon
rna-seq
swish
bootstrap
fishpond
updated 19 months ago by
Michael Love
40k • written 19 months ago by
samuelcjx
• 0
0
votes
6
replies
834
views
tximport lose transcript names with Salmon bootstrap
salmon
tximport
bootstrap
updated 3.5 years ago by
julia.jefferson23
• 0 • written 3.5 years ago by
Cindy
• 0
0
votes
0
replies
739
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
5.5 years ago
Larry K.
• 0
0
votes
0
replies
761
views
Jackknifing/bootstrapping input and output question
jackknifing
R
microarray
bootstrap
6.2 years ago
bhgyu
▴ 30
1
vote
7
replies
1.2k
views
[GSVM] bootstrapping error
GSVM
bootstrap
snow
updated 6.7 years ago by
Robert Castelo
★ 3.0k • written 6.7 years ago by
mforde84
▴ 20
0
votes
1
reply
3.3k
views
ape - delete bootstrap values (node.labels) less than a certain value
ape
bootstrap
node
phylogenetic
tree
8.3 years ago
wd
▴ 30
0
votes
1
reply
1.5k
views
DESeq2 -- Bootstrap subsampling to estimate distribution of expression
deseq2
bootstrap
differential expression
updated 8.5 years ago by
Michael Love
40k • written 8.5 years ago by
David Eccles (gringer)
▴ 30
7 results • Page
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Comment: Problems with FLOWAI
by
SHASHI
• 0
please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA
Comment: DataFrame Construction With Non-standard Column
by
Hervé Pagès
16k
SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…
Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
by
swbarnes2
★ 1.3k
The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…
Answer: Remove duplicates of colData in TreeSummarizedExperiment
by
Michael Love
40k
Copying my code from Slack for posterity. James' code is more streamlined for this step I think. ``` # make a dataset that has duplicate s…
Comment: DataFrame Construction With Non-standard Column
by
James W. MacDonald
63k
Oh, ok. I understand. Technically both should work according to what the help page for `DataFrame` says (both `SimpleList` and `list` have …
Votes
A: LIMMA dupcor() function time issue.
A: LIMMA dupcor() function time issue.
Answer: Further analysis after limma regression output
A: collapseReplicates in DESeq2
Answer: DataFrame Construction With Non-standard Column
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