PSICQUIC: Direction of interaction
0
0
Entering edit mode
kmezhoud ▴ 10
@kmezhoud-6841
Last seen 2.5 years ago
Tunisia

Hi,

PSICQUIC is an interesting package. it groups multiple interactomics databases.

Specially reactomeFIs provider displays the DIRECTION of the interaction in column 4 (see sample below).  I am seeking for this kind of information.

If PSICQUIC does not have this kind of information, is there an other resource that has it?

Karim

Thanks

head(reactomeFIs)

Gene1    Gene2    Annotation    Direction    Score
16-5-5    CDC42    predicted    -    0.85
16-5-5    PARD3    predicted    -    0.92
16-5-5    PARD3B    predicted    -    0.92
16-5-5    PRKCI    predicted    -    0.92
16-5-5    PRKCZ    predicted    -    0.92
16-5-5    RHOJ    predicted    -    0.85
16-5-5    RHOQ    predicted    -    0.85
6M1-16    ADRBK2    PPrel: inhibited by, phosphorylated by    |-    1.00
6M1-16    ARRB2    PPrel: inhibited by    |-    1.00
6M1-16    DKFZP686L0365    PPrel: inhibition    -|    1.00
6M1-16    GNAL    PPrel: activation    ->    1.00

http://reactomews.oicr.on.ca:8080/caBigR3WebApp2014/FIsInGene_121514_with_annotations.txt.zip)

 

> sessionInfo()
R version 3.2.1 (2015-06-18)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.10.4 (Yosemite)

but also Kubuntu 14.10

network protein interaction analysis • 753 views
ADD COMMENT

Login before adding your answer.

Traffic: 501 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6