Showing : network • reset
0
votes
1
reply
202
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Network analysis: Is low confidence score valid (STRING DB)
STRINGdb Network
updated 3 months ago by 3.4k • written 3 months ago by • 0
0
votes
0
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153
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Job: Postdoc in computational cancer biology at IEO, Milan, Italy
TCGAbiolinks BiomedicalInformatics Network
5 months ago martin.schaefer • 0
0
votes
0
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174
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
8 months ago jol.espinoz ▴ 40
15
votes
17
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12k
views
WGCNA: What is `soft thresholding`?
wgcna network analysis network correlation coexpression
updated 9 months ago by ▴ 650 • written 5.0 years ago by ▴ 40
4
votes
2
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288
views
iSEE - Custom Panel
Network GeneNetwork iSEE
updated 10 months ago by ★ 27k • written 10 months ago by • 0
2
votes
1
reply
852
views
Calculation of module membership in WGCNA
WGCNA RNA-seq ModuleMembership Network Hub gene
updated 13 months ago by ★ 2.6k • written 13 months ago by ▴ 50
0
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2
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275
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Soft-threshold in WGCNA
wgcna network bicor threshold
updated 13 months ago by ★ 2.6k • written 13 months ago by ▴ 50
2
votes
0
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97
views
Quality Metrics for Graph Clustering for Biological Networks
R protein-interaction networks network
15 months ago hamza_karakurt ▴ 50
2
votes
2
replies
309
views
[WGCNA]How to visualize network of genes in one module
WGCNA network
updated 19 months ago by 3.4k • written 19 months ago by ▴ 10
0
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4
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408
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Case-control study using WGCNA
wgcna network rna-seq
21 months ago ag1805x ▴ 50
1
vote
1
reply
366
views
WGCNA gene clusters vs eigengenes
wgcna network coexpression eigengenes
updated 2.0 years ago by 43k • written 2.0 years ago by ▴ 10
2
votes
1
reply
522
views
Normalize within-/between-samples RNA-seq counts to weight networks
normalization CQN deseq2 RNA-seq network
updated 2.3 years ago by 34k • written 2.3 years ago by • 0
2
votes
3
replies
319
views
WGCNA from different lengths RNAseq read
wgcna network co-expression rnaseq
updated 2.4 years ago by ★ 2.6k • written 2.4 years ago by ▴ 50
6
votes
7
replies
982
views
WGCNA - networking RNA seq gives only one module!
WGCNA R network co-expression
updated 2.4 years ago by ★ 2.6k • written 2.4 years ago by ▴ 10
0
votes
1
reply
433
views
igraph clustering for gene coexpression network
igraph network gene corexpression rna-seq
updated 5 weeks ago by 43k • written 2.5 years ago by • 0
0
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0
replies
337
views
Help with creating tumor cell line network
nci network
3.3 years ago torgeirous • 0
0
votes
0
replies
471
views
Help with generating network from gene expression data
gene expression network cytoscape
3.7 years ago torgeirous • 0
1
vote
1
reply
515
views
Setting soft threshold when comparing 2 networks in WGCNA?
wgcna coexpression cooccurrence coabundance network
updated 3.9 years ago by ▴ 650 • written 4.0 years ago by ▴ 40
1
vote
1
reply
842
views
Custom scoring for subnetworks in BioNet
bionet network
updated 5.3 years ago by ▴ 120 • written 5.3 years ago by ▴ 570
1
vote
2
replies
691
views
Additional high-scoring subnetworks in BioNet
bionet network
updated 5.3 years ago by ▴ 120 • written 5.3 years ago by ▴ 570
0
votes
2
replies
1.7k
views
WGCNA - Using real data for tutorial III
pathways wgcna network rna-seq
5.7 years ago hywel.williams • 0
5
votes
14
replies
3.2k
views
Connection Refused on port 9000 - RCytoscape
rcytoscape r network graphBAM object
updated 5.8 years ago by ★ 8.2k • written 5.8 years ago by ▴ 50
0
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0
replies
779
views
Job: Post-doc: Bioinformatics/Metabolic networks (Genoscope, near Paris, France)
network metabolism post-doc Job
5.9 years ago kbastard • 0
2
votes
5
replies
737
views
runing NetBenchmark on my own datasets
software error network
updated 5.9 years ago by ▴ 20 • written 5.9 years ago by ▴ 40
0
votes
0
replies
747
views
PSICQUIC: Direction of interaction
network protein interaction analysis
6.2 years ago kmezhoud ▴ 10
1
vote
2
replies
1.6k
views
cnetplot() - library(clusterProfiler)
clusterProfiler network
6.3 years ago cristina della beffa ▴ 30
0
votes
0
replies
1.0k
views
Job: Help with finding R tutors for microarray analysis, next generation sequencing and constructing gene interaction networks needed
bioconductor microarray network tutoring differential gene expression Job
6.7 years ago Thomas.F.Hahn2 • 0
1
vote
7
replies
1.9k
views
Shiny app for RefNet, PSICQUIC: annotated protein/protein interactions
shiny network interactions
6.9 years ago pshannon ▴ 90
1
vote
2
replies
2.8k
views
Rearrange dendrogram to match merged modules in WGCNA?
wgcna dendrogram network hclust
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by ▴ 180
2
votes
6
replies
3.4k
views
Error running TOMplot in WGCNA package
wgcna network
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by ▴ 180
7
votes
1
reply
2.7k
views
Using RNA-Seq raw count data in Weighted Gene Co-Expression Network Analysis
rnaseq network limma
updated 7.0 years ago by 13k • written 7.0 years ago by ▴ 180
7
votes
4
replies
5.2k
views
WGCNA: overlapping colors in plotDendroAndColors?
wgcna plotDendroAndColors Network
updated 7.0 years ago by ★ 2.6k • written 7.0 years ago by ▴ 150
0
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0
replies
698
views
回复： XVector
Network Cancer IRanges XVector
7.0 years ago Hervé Pagès 15k
1
vote
1
reply
940
views
WGCNA_ Eigengene and sample complications correlations
Network Network
updated 7.2 years ago by ★ 2.6k • written 7.2 years ago by ▴ 130
0
votes
1
reply
1.0k
views
WGCNA_ problem in creating scale free topology plot
Network Network
updated 7.3 years ago by 58k • written 7.3 years ago by ▴ 130
0
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0
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881
views
PostDoc opportunity
Pathways Network Pathways Network
7.3 years ago Guest User ★ 12k
0
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0
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1.5k
views
Pathview question
Network convert pathview Network convert pathview
7.4 years ago Luo Weijun ★ 1.5k
0
votes
2
replies
3.7k
views
WGCNA package
Network Network
updated 7.5 years ago by ★ 2.6k • written 7.5 years ago by ▴ 130
0
votes
0
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1.4k
views
IdeogramTrack and bigWig file errors in Gviz
GO Network rtracklayer CAMERA Gviz GO Network rtracklayer CAMERA Gviz
7.5 years ago Robert Ivanek ▴ 690
0
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0
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585
views
tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small
Network Network
7.7 years ago Paul Shannon ▴ 750
0
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0
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685
views
RCytoscape: tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small
SystemsBiology Network RCytoscape SystemsBiology Network RCytoscape
7.7 years ago Paul Shannon ▴ 750
0
votes
2
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2.5k
views
Gene filtering for RNA-seq data
Normalization GO Network HTSFilter DESeq2 Normalization GO Network HTSFilter DESeq2
updated 7.8 years ago by 34k • written 7.8 years ago by ★ 12k
0
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1
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1.1k
views
How to compare GO term lists and create matching network?
GO Network GUI Organism GO Network GUI Organism
updated 7.9 years ago by ▴ 750 • written 7.9 years ago by ▴ 160
0
votes
1
reply
937
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq GO Network rtracklayer CAMERA chipseq Gviz ChIPSeq GO Network rtracklayer Gviz
updated 8.0 years ago by 11k • written 8.0 years ago by ▴ 40
0
votes
0
replies
1.9k
views
8. CGHCall problems (Bernard North [guest]) : Bioconductor Digest, Vol 126, Issue 7
aCGH RNASeq ChIPSeq Proteomics Annotation Normalization GO Network Cancer ChipName probe
8.0 years ago Sarah JugurnauthLittle ▴ 20
0
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0
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690
views
Error converting SBML to graph Object using R SBML
Network graph convert rsbml Network graph convert rsbml
8.1 years ago Michael Lawrence 11k
0
votes
2
replies
855
views
limma for homemade microarray - question on NAs and multiple probes for one gene
Microarray Normalization GO Network Cancer probe limma Microarray Normalization GO probe
updated 8.2 years ago by 43k • written 8.2 years ago by ★ 2.6k
0
votes
7
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598
views
(no subject)
Network Network
updated 8.4 years ago by 43k • written 8.4 years ago by ▴ 60
0
votes
0
replies
1.2k
views
Job opening, KCL Breakthrough Breast Cancer Research Unit
Sequencing Network Cancer Breast Sequencing Network Cancer Breast
8.4 years ago Lawler, Katherine ▴ 40
0
votes
2
replies
783
views
IdeogramTrack and bigWig file errors in Gviz
Network rtracklayer CAMERA Gviz Network rtracklayer CAMERA Gviz
8.4 years ago Michael Lawrence 11k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Warning messages on Apple M1 BigSur by Alexandre • 0
ok thanks, but that means R will run slower right ? Since Rosetta 2 is emulation environment, correct ?
Answer: Bioinformatics Research Associate, University of Adelaide by keong • 0
I aspire to be a bioinformatics expert, maybe this is the best opportunity for me try this vacancy,thanks for this information great off…
Answer: Effect size using likelihood ratio test in DESeq2 by ATpoint ▴ 830
The thing with time-courses is that you do not necessarily have binary patterns of gene expression changes being only up-or downregulated. …
Answer: Undefined columns error R cytometry analysis by Jiang, Mike ★ 1.3k
I see you are trying to fill the missing transform info to `gs_bcell_auto` , which is a hack, but since you seems to know what you are doin…
Comment: how to get MFI stats from data by Jiang, Mike ★ 1.3k
Can you grant the public caccess to you fcs to reproduce your issue?
Votes
Answer: Warning messages on Apple M1 BigSur
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
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