xyplot of flowViz
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Jiang, Mike ★ 1.3k
@jiang-mike-4886
Last seen 23 days ago
(Private Address)

Joachim,

When you construct a formula like channel1 ~ channel2, 'channel1' and 'channel2' are simply treated as symbols and will be passed to xyplot as they are without evaluating. One solution is to construct a string and convert it to a formula.

f_str <- paste0(channel1, "~", channel2)

f <- as.formula(f_str)

xyplot(f, frame)

See another related post regarding to the formula A: xyplot can't find channel (flowViz)

Mike



Hi Mike,

I want to use the xyplot method of the flowViz package. I'm writing a method in which the user determines the channels he want to use for the xyplot like the followgin:

plot<-function(channel1="FS.Log",channel2="FL.4.Log"){
frame<-read.FCS(...)
xyplot(channel1 ~ channel2, frame)
}

But this does not work because channel1 within the xyplot method does not match channel1 in the function definition. I also tried to do it without quotes (channel1=FS.Log) but this does not work, too. Do you know what I can do to get a match in this way?

Best,
Joachim

--
M. Sc. Joachim Schumann 

 

flowviz flow cytometry • 663 views
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