I am getting this error when i try to read the vcf output from Delly ver 0.6.7
Error in dellyCont[dellyCont$map_quality >= minMappingQuality & dellyCont$rp_support >= :
incorrect number of dimensions
> sessionInfo()
R version 3.2.1 (2015-06-18)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.10.4 (Yosemite)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] rtracklayer_1.28.6 intansv_1.8.0 GenomicRanges_1.20.5 GenomeInfoDb_1.4.1 IRanges_2.2.5
[6] S4Vectors_0.6.3 plyr_1.8.3 ggbio_1.16.1 BiocGenerics_0.14.0 ggplot2_1.0.1
loaded via a namespace (and not attached):
[1] VariantAnnotation_1.14.6 reshape2_1.4.1 splines_3.2.1 lattice_0.20-33
[5] colorspace_1.2-6 GenomicFeatures_1.20.1 RBGL_1.44.0 survival_2.38-3
[9] XML_3.98-1.3 foreign_0.8-65 DBI_0.3.1 BiocParallel_1.2.18
[13] RColorBrewer_1.1-2 lambda.r_1.1.7 stringr_1.0.0 zlibbioc_1.14.0
[17] Biostrings_2.36.2 munsell_0.4.2 gtable_0.1.2 futile.logger_1.4.1
[21] OrganismDbi_1.10.0 latticeExtra_0.6-26 Biobase_2.28.0 GGally_0.5.0
[25] biomaRt_2.24.0 AnnotationDbi_1.30.1 proto_0.3-10 Rcpp_0.12.0
[29] acepack_1.3-3.3 BSgenome_1.36.3 scales_0.2.5 graph_1.46.0
[33] Hmisc_3.16-0 XVector_0.8.0 Rsamtools_1.20.4 gridExtra_2.0.0
[37] digest_0.6.8 stringi_0.5-5 biovizBase_1.16.0 grid_3.2.1
[41] tools_3.2.1 bitops_1.0-6 magrittr_1.5 RCurl_1.95-4.7
[45] RSQLite_1.0.0 dichromat_2.0-0 Formula_1.2-1 cluster_2.0.3
[49] futile.options_1.0.0 MASS_7.3-43 reshape_0.8.5 rpart_4.1-10
[53] GenomicAlignments_1.4.1 nnet_7.3-10
