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Question: Crlmm HumanOmniExpress-24v1 Annotation not available
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gravatar for andrew.j.skelton73
2.3 years ago by
United Kingdom
andrew.j.skelton73290 wrote:

Hi, 

I've got some Illumina HumanOmniExpress-24v1 data, and I was going to use Crlmm to read the IDAT files in and carry out genotyping, but the 24 well version of the chip doesn't seem to be available, I was wondering if there was going to be support for it?

Any suggestions for alternatives would be welcome!

Thanks, 

ADD COMMENTlink modified 2.3 years ago by Matthew Ritchie660 • written 2.3 years ago by andrew.j.skelton73290

I guess an alternative is to split the IDAT files into two sets of 12, as they're essentially the same chip, just 12/24 well versions. Anyone have any experience with this?

ADD REPLYlink written 2.3 years ago by andrew.j.skelton73290
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gravatar for Matthew Ritchie
2.3 years ago by
Australia
Matthew Ritchie660 wrote:

Hi Andrew,

We don't currently support this platform, but are working towards an approach to handle data from any arbitrary platform without the need for a chip-specific package - we hope to make it available in the next release. Best wishes,

Matt

ADD COMMENTlink written 2.3 years ago by Matthew Ritchie660

Cheers Matt, any idea on the time scale for the next release?

ADD REPLYlink written 2.3 years ago by andrew.j.skelton73290
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