Hello all,
I have recently updated tp BioConductor 1.5 and upon trying to use the
function "ll.htmlpage" from the package "annotate" I seem to encounter
the following problem:
>ll.htmlpage(xxxLI, filename = "xxx.html",
+ title = "xxx", othernames = data.frame(xxxRes,
+ pvalue=xxxP,FC),
+ table.head = c("Locus ID", "Gene Symbol",
"Pvalue","FC"),
table.center = TRUE)
Error: couldn't find function "ll.htmlpage"
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
This function used to work fine in the previous versions of BioC as
far
as I can tell. Has it been deprecated? Abolished? Am I doing something
terribly wrong - most likely possibility :-)-?
Sorry if this subject has already been addressed here. I have searched
the mailing list unsuccessfully.
Thanks in advance,
Fatima
*****************
F?tima N??ez
Centre for Cancer Research (CIC)
University of Salamanca-CSIC
Campus Unamuno
37007 Salamanca
Spain
Phone: + 34 923 294802
Fax: + 34 923 294743
E-mail: fnunez@usal.es
Hi F?tima
> I have recently updated tp BioConductor 1.5 and upon trying to use
the
> function "ll.htmlpage" from the package "annotate" I seem to
encounter
> the following problem:
>
>
>>ll.htmlpage(xxxLI, filename = "xxx.html",
>
> + title = "xxx", othernames = data.frame(xxxRes,
> + pvalue=xxxP,FC),
> + table.head = c("Locus ID", "Gene Symbol",
"Pvalue","FC"),
> table.center = TRUE)
>
> Error: couldn't find function "ll.htmlpage"
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> This function used to work fine in the previous versions of BioC as
far
> as I can tell. Has it been deprecated? Abolished? Am I doing
something
> terribly wrong - most likely possibility :-)-?
It seems that somebody has renamed this function (rightly so, in my
opinion, since the previous name didn't make too much sense). Try
> help.search("htmlpage")
HTMLPage-class(annotate)
Classes to represent HTML pages
htmlpage(annotate)
Functions to build HTML pages
and there are also some related (and probably mildly duplicative)
functions:
write.htmltable(arrayMagic)
Write a data frame into an html
table within a html page
htmlPage(marray)
Display gene list as a HTML
page
Best regards
Wolfgang
-------------------------------------
Wolfgang Huber
European Bioinformatics Institute
European Molecular Biology Laboratory
Cambridge CB10 1SD
England
Phone: +44 1223 494642
Fax: +44 1223 494486
Http: www.ebi.ac.uk/huber
