Question: SCAN.UPC eset not providing phenoData
gravatar for Jo
3.0 years ago by
Jo10 wrote:


I tried to use the SCAN.UPC package method UPCfast to generates an eset for the geo dataset: GSE21610.

eset <- UPCfast("GSE21610")

When I opened the eset I got this result:

ExpressionSet (storageMode: lockedEnvironment)
assayData: 54675 features, 68 samples 
  element names: exprs 
protocolData: none
phenoData: none
featureData: none
experimentData: use 'experimentData(object)'

There was no phenoData or featureData. Is this normal? I would like to access the phenoData of the eset.


ADD COMMENTlink modified 3.0 years ago by Stephen Piccolo510 • written 3.0 years ago by Jo10
gravatar for Stephen Piccolo
3.0 years ago by
United States
Stephen Piccolo510 wrote:

Hi Jo,

Yes, that is expected behavior. Seeing if I can add this information is on my TODO list, but I haven't been able to get to it yet.


ADD COMMENTlink written 3.0 years ago by Stephen Piccolo510
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