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Showing :
scan.upc
•
reset
2
votes
4
replies
1.3k
views
SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC
probe
normalization
GEOdata
cancer
5.3 years ago
s.goncalvesclaro
▴ 10
4
votes
13
replies
2.2k
views
Why is batch effect correction an option in SCAN.UPC normalization?
scan.upc
upc
normalization
batch effect correction
updated 6.0 years ago by
Stephen Piccolo
▴ 600 • written 6.0 years ago by
y.li.1
• 0
2
votes
8
replies
2.0k
views
Transcript-level SCAN.UPC preprocessing for Affymetrix HTA 2.0 arrays
microarray
scan.upc
hta2.0
updated 6.6 years ago by
Stephen Piccolo
▴ 600 • written 6.6 years ago by
Lukas__
• 0
1
vote
3
replies
1.2k
views
Normalization of multiple HTA 2.0 arays using SCAN.UPC
scan.upc
6.7 years ago
Seymoo
• 0
1
vote
4
replies
1.3k
views
ParseMetaFromGtfFile() from SCAN.UPC package fails to produce annotation file
annotation
SCAN.UPC
updated 6.9 years ago by
Stephen Piccolo
▴ 600 • written 6.9 years ago by
lhuang7
▴ 50
1
vote
2
replies
1.1k
views
UPC transposes output data
scan.upc
updated 7.4 years ago by
Stephen Piccolo
▴ 600 • written 7.4 years ago by
guus.steeg
▴ 10
0
votes
9
replies
2.5k
views
Question about Agilent microarray data measurement
Agilent
limma
scan.upc
microarray
7.7 years ago
Maximilian
▴ 10
0
votes
2
replies
1.5k
views
UPC correction for GC content?
scan.upc
upc_generic_expressionset
upc
updated 8.4 years ago by
Stephen Piccolo
▴ 600 • written 8.4 years ago by
minnie
• 0
0
votes
2
replies
1.5k
views
UPC method giving error for Microarray dataset
scan.upc
UPC
updated 8.6 years ago by
Stephen Piccolo
▴ 600 • written 8.6 years ago by
Vani
▴ 20
0
votes
1
reply
1.3k
views
Error with SCAN.UPC UPC_RNASeq method
scan.upc
RNA-Seq
UPC
8.6 years ago
vn
• 0
0
votes
1
reply
1.2k
views
UPC RNA-Seq individual samples
scan.upc
upc
rnaseq
updated 8.6 years ago by
Stephen Piccolo
▴ 600 • written 8.6 years ago by
Jo
▴ 30
0
votes
1
reply
1.3k
views
RNA-Seq Read Counts for SCAN.UPC
scan.upc
rnaseq
updated 8.6 years ago by
Stephen Piccolo
▴ 600 • written 8.6 years ago by
Jo
▴ 30
0
votes
3
replies
1.3k
views
Comparing SCAN Q.value with Meta-Analyses Q.Value
scan.upc
scan
meta
q value
8.7 years ago
Jo
▴ 30
0
votes
1
reply
1.2k
views
SCAN.UPC eset not providing phenoData
scan.upc
eset
updated 9.0 years ago by
Stephen Piccolo
▴ 600 • written 9.0 years ago by
Jo
▴ 30
0
votes
3
replies
1.6k
views
SCAN.UPC giving error for multiple input files
scan.upc
updated 9.0 years ago by
Stephen Piccolo
▴ 600 • written 9.0 years ago by
Vani
▴ 20
0
votes
1
reply
1.0k
views
Error when using write.table() with SCAN.UPC ESET
scan.upc
write.table
9.0 years ago
Vani
▴ 20
0
votes
4
replies
1.7k
views
SCAN-normalized values on log2 scale?
scan.upc
updated 9.0 years ago by
Stephen Piccolo
▴ 600 • written 9.0 years ago by
Jenny Drnevich
★ 2.0k
1
vote
2
replies
1.5k
views
Problem Installing SCAN.UPC
scan.upc
installation
bioconductor
9.0 years ago
Vani
▴ 20
1
vote
3
replies
1.6k
views
SCAN UPC normalisation
normalization
scan.upc
9.3 years ago
sanj
▴ 20
0
votes
1
reply
1.3k
views
SCAN.UPC for Agilent single channel and Illumina
microarray
scan.upc
updated 9.4 years ago by
Stephen Piccolo
▴ 600 • written 9.4 years ago by
sathyabaarathi
• 0
2
votes
13
replies
2.9k
views
SCAN.UPC: exception thrown when loading GEOQuery
scan.upc
geoquery
rcurl
9.6 years ago
lep
▴ 90
0
votes
5
replies
2.0k
views
Single sample normalization of single-channel Agilent microarrays
affy
frma
SCAN.UPC
affy
frma
SCAN.UPC
updated 9.9 years ago by
Ryan C. Thompson
★ 7.9k • written 9.9 years ago by
Guest User
★ 13k
0
votes
0
replies
917
views
FYI: SCAN.UPC and HuGene 1/2 arrays
SCAN.UPC
SCAN.UPC
10.1 years ago
Stephen Piccolo
▴ 600
0
votes
3
replies
1.3k
views
ParseMetaFromGtfFile is.na() error
Annotation
SCAN.UPC
Annotation
SCAN.UPC
updated 10.1 years ago by
Michael Lawrence
★ 11k • written 10.1 years ago by
Guest User
★ 13k
0
votes
0
replies
1.2k
views
Problem when trying to use \'affy\' package
Normalization
GO
affy
sva
SCAN.UPC
Normalization
GO
affy
sva
SCAN.UPC
10.5 years ago
Kaj Chokeshaiusaha
▴ 140
0
votes
2
replies
1.5k
views
SCAN.UPC vs NUSE
affy
affyPLM
SCAN.UPC
affy
affyPLM
SCAN.UPC
updated 10.8 years ago by
Stephen Piccolo
▴ 600 • written 10.8 years ago by
Leif Peterson
▴ 10
0
votes
1
reply
1.2k
views
fRMA without using ReadAffy()
frma
SCAN.UPC
frma
SCAN.UPC
updated 11.2 years ago by
Matthew McCall
▴ 830 • written 11.2 years ago by
S.D. Chorlton
▴ 10
0
votes
1
reply
1.5k
views
SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
Normalization
hgu133a
probe
affy
PROcess
SCAN.UPC
Normalization
hgu133a
probe
affy
updated 11.2 years ago by
Andrew Yates
▴ 20 • written 11.2 years ago by
Stephen Piccolo
▴ 600
0
votes
0
replies
1.1k
views
about expression value generated by SCAN UPC package
SCAN.UPC
SCAN.UPC
11.4 years ago
gregory voisin
▴ 430
0
votes
1
reply
1.4k
views
SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
hgu133a
probe
affy
SCAN.UPC
hgu133a
probe
affy
SCAN.UPC
updated 11.4 years ago by
Andrew Yates
▴ 20 • written 11.4 years ago by
Stephen Piccolo
▴ 600
0
votes
1
reply
1.4k
views
SCAN UPC probability - validation of gene expression results using UPC
hgu133a2
safe
SCAN.UPC
hgu133a2
safe
SCAN.UPC
updated 11.7 years ago by
Stephen Piccolo
▴ 600 • written 11.7 years ago by
W. Evan Johnson
▴ 850
0
votes
1
reply
1.3k
views
[combat] UPC availablility
affy
frma
SCAN.UPC
affy
frma
SCAN.UPC
updated 11.7 years ago by
Stephen Piccolo
▴ 600 • written 11.7 years ago by
W. Evan Johnson
▴ 850
32 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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