I am using your no.mops for a cancer project and I annotated the cnv regions to get gene symbol info.
What the results showed is that one gene in one of the samples that is supposed to have ~2.5 CNV did not show any cnv which means no call at all. In other samples the gene got called so this region is fine in exomeseq procedure.
I wonder if the fdr is too stringent however I can’t see any p value or fdr values in the output.
Can you kindly point out where I can find these relevant info? Or is there any other reasons that this gene is not called?