Showing : cn.mops • reset
1
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2
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977
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" 'end' must be >= 'start' - 1" error in cn.mops
cn.mops
2.5 years ago User000 • 0
0
votes
3
replies
1.6k
views
cn.mops segmentation error
cn.mops
updated 2.6 years ago by • 0 • written 2.7 years ago by ▴ 40
0
votes
1
reply
717
views
Suspected bug on GetReadCountsFromBAM in cn.mops
cn.mops
4.7 years ago asafpr • 0
0
votes
1
reply
918
views
How to use panelcn.mops to detect CNVs from whole genome data by getting count windows from BED file?
cn.mops panelcn.mops CNV detection CNV
5.1 years ago metzgerlukas • 0
0
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0
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669
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cn.mops : undef chromsome using data matrix as input
CNV cn.mops undef
5.1 years ago ankita.narang86 • 0
0
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0
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945
views
cn.MOPS output - mean/median of what?
cn.MOPS CNV copy number
5.1 years ago liorglic ▴ 10
0
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1
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1.0k
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CNV plot using cn.mops
cnv R plot visualization cn.mops software error
5.3 years ago ari • 0
0
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0
replies
776
views
ChrM causes "missing value where TRUE/FALSE needed" error
cn.mops
5.4 years ago millerh1 ▴ 10
0
votes
1
reply
1.1k
views
Error using singlecn.mops for cnv detection in WGS data
cnv cn.mops singlecn.mops
updated 3.1 years ago by • 0 • written 5.4 years ago by • 0
0
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2
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1.4k
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problem about using cn.mops
cn.mops
updated 3.8 years ago by • 0 • written 5.7 years ago by • 0
0
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3
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1.2k
views
Error in if (all(x <= minReadCount) & lambda <= minReadCount) { : missing value where TRUE/FALSE needed
cnmops cn.mops error
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
1
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4
replies
1.3k
views
cn.mops on CRAM files
cn.mops
updated 5.8 years ago by ▴ 540 • written 5.8 years ago by • 0
2
votes
3
replies
1.6k
views
mosdepth output into cn.mops?
cn.mops
updated 6.0 years ago by ▴ 540 • written 6.0 years ago by • 0
0
votes
0
replies
860
views
cn.mops normalization of multiple samples
cn.mops
6.1 years ago DannyM • 0
0
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0
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1.2k
views
Mean and median values in cn.mops cnvs output
cn.mops referencecn.mops
updated 6.2 years ago by 0 • written 6.3 years ago by • 0
0
votes
3
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1.2k
views
tumor vs control: multiple samples
cn.mops
6.3 years ago • updated 6.2 years ago DannyM • 0
0
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1
reply
1.2k
views
cn.MOPS: Error in getReadCountsFromBAM
cn.mops
6.5 years ago laurabuggiotti • 0
0
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0
replies
1.2k
views
Doubt about the interpretation of cn.mops tumor vs normal results
cn.mops dnaseq bioinformatics
6.6 years ago Cased • 0
0
votes
0
replies
852
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How to interpret out of referencecn.mops
referencecn.mops cn.mops
6.7 years ago eddie.kaho.ho • 0
0
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18
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5.6k
views
cn.MOPs: Error in value[[3L]](cond) :
cn.mops
updated 6.7 years ago by ▴ 540 • written 6.7 years ago by • 0
2
votes
3
replies
1.8k
views
Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 6.7 years ago by ▴ 540 • written 6.7 years ago by • 0
0
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1
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1.2k
views
cn.mops: interpreting output when returnPosterior=TRUE
cn.mops
updated 6.9 years ago by ▴ 540 • written 6.9 years ago by • 0
0
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2
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1.3k
views
best way to normalize for differences in sample read depth: normalize genome vs cn.MOPs
cn.mops normalization
updated 2.0 years ago by • 0 • written 7.0 years ago by • 0
1
vote
2
replies
2.1k
views
cn.MOPS error: Error in if (WL >= sl[i]) { : missing value where TRUE/FALSE needed
cn.mops
7.1 years ago hugo.magalhaes ▴ 10
0
votes
1
reply
1.4k
views
Inconsistent Warning: GRanges out of bounds
cn.mops granges trim Genomicranges-method
7.1 years ago znl207 • 0
0
votes
1
reply
1.3k
views
Error with plotting with target sequencing data
cn.mops
updated 7.1 years ago by ▴ 540 • written 7.1 years ago by • 0
2
votes
6
replies
3.1k
views
Cn.mops error: Error in if (sum(rds.counts) == 0) { : missing value where TRUE/FALSE needed
software error cn.mops
updated 12 months ago by • 0 • written 7.2 years ago by ▴ 10
0
votes
5
replies
1.9k
views
Error when use getSegmentReadCountsFromBAM
targeted sequencing cn.mops
7.2 years ago jinxinhao1988 • 0
0
votes
2
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1.8k
views
cn.MOPs issue with "Error in if (all(segMedianT == 0))"
cn.mops cnv
updated 7.3 years ago by ▴ 540 • written 7.3 years ago by ▴ 20
0
votes
4
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1.7k
views
Is cn.mops can be used for detecting CNV for targeted sequencing of 8M region
cn.mops
updated 7.3 years ago by ▴ 540 • written 7.3 years ago by • 0
5
votes
7
replies
1.9k
views
about the runs with cn.mops
cn.mops referencecn.mops
7.6 years ago Bogdan ▴ 670
1
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2
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1.9k
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cn.MOPS - reporting log normalized read counts as table
cn.mops log normalized counts table
updated 7.7 years ago by ▴ 540 • written 7.7 years ago by • 0
0
votes
1
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1.3k
views
getReadCountsFromBAM including bed information
cn.mops bed files getReadCountsFromBAM
7.7 years ago Pau Marc Muñoz Torres ▴ 20
5
votes
9
replies
2.3k
views
reduce function after combining 2 GRanges objects from cn.mops output
GRanges cn.mops
updated 7.8 years ago by ★ 11k • written 7.8 years ago by ▴ 110
2
votes
1
reply
1.3k
views
How to combine CNVDetectionResult objects in cn.mops package
cn.mops
updated 7.8 years ago by ▴ 540 • written 7.8 years ago by ▴ 110
0
votes
2
replies
1.4k
views
getReadCountsFromBAM and paired-end reads
cn.mops
7.8 years ago Alexandre Kuhn ▴ 20
4
votes
2
replies
1.7k
views
using cn.MOPS on WES data GERMLINE-TUMOR
cn.mops
7.8 years ago Bogdan ▴ 670
0
votes
2
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1.6k
views
Conflict in cnvr and cnvs result from cn.mops
cn.mops
updated 7.8 years ago by ▴ 540 • written 7.9 years ago by • 0
0
votes
4
replies
1.6k
views
cn.mops encounter negative width problem
cn.mops referencecn.mops
updated 7.9 years ago by ▴ 540 • written 7.9 years ago by • 0
3
votes
1
reply
1.4k
views
R code for cn.mops -- if a chromosome does not have CNV ?
cn.mops referencecn.mops
updated 7.9 years ago by ▴ 540 • written 8.1 years ago by ▴ 670
3
votes
5
replies
1.9k
views
R code for cn.mops
cn.mops
updated 2.0 years ago by • 0 • written 8.1 years ago by ▴ 670
1
vote
1
reply
1.2k
views
which cn.mops function should I use
cn.mops
updated 7.9 years ago by ▴ 540 • written 7.9 years ago by • 0
0
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1
reply
1.3k
views
cn.mops returning only "NA" as copy number
cn.mops
updated 8.0 years ago by ▴ 540 • written 8.1 years ago by • 0
0
votes
2
replies
1.6k
views
about an error in cn.MOPS : could not find symbol "recursive" in environment of the generic function
cn.MOPS
8.1 years ago Bogdan ▴ 670
4
votes
3
replies
1.6k
views
parameter "refSeqName" in function "getReadCountsFromBAM"
cn.mops
updated 8.1 years ago by ▴ 540 • written 8.6 years ago by • 0
0
votes
4
replies
1.7k
views
Call CNV in population with large depth variance
cn.mops
updated 8.2 years ago by ▴ 540 • written 8.2 years ago by • 0
4
votes
9
replies
2.8k
views
How to use cn.mops to detect CNVs from Targeted DNA Sequencing data?
cn.mops cnv targeted sequencing
updated 8.2 years ago by ▴ 540 • written 8.2 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Input (X) data type is not numeric if read from GRanges obj
cn.mops
updated 8.2 years ago by ▴ 540 • written 8.2 years ago by • 0
1
vote
2
replies
1.5k
views
cn.mops: NA in the output of referencecn.mops
cn.mops referencecn.mops
updated 8.3 years ago by ▴ 540 • written 8.4 years ago by ▴ 90
0
votes
2
replies
1.3k
views
about cn.MOPS: paired vs unpaired
cn.mops
updated 8.4 years ago by ▴ 540 • written 8.4 years ago by ▴ 670
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Comment: Package developing and interoperation with Bioconductor by shepherl 4.1k
Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0
1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …
Comment: Validity of SingleR with very small bulk RNAseq reference by Rohit • 0
Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge
Comment: CpGs with genomic positions greater than the chromosome size in EPICv2? by Joshua Llano • 0
Thank you for your reply James. I was worried that it was my mistake.
Comment: Annotation package for Manduca sexta by GA ▴ 10
Thank you!
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Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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