how can I access my local files (data, R-scripts) from the *docker* R/Bioconductor?
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anton.kratz ▴ 60
@antonkratz-8836
Last seen 11 weeks ago
United States, San Diego, UCSD

I am using R/Bioconductor by invoking

docker run -p 8787:8787 bioconductor/devel_base

and then I point my browser to

http://localhost:8787

to access RStudio.

It works without any problems.

But how can I access my raw data files and R-scripts on my local filesystem? I.e. how can I link my local filesystem to docker?

 

--

This is under Xubuntu 14.04.3 (xubuntu-14.04.3-desktop-amd64).

docker ubuntu • 1.2k views
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Dan Tenenbaum ★ 8.2k
@dan-tenenbaum-4256
Last seen 5 months ago
United States

Read the relevant docker documentation. Also read what rocker has to say about permissions when doing this.

 

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Thanks, I could get it to work with this command:

docker run -v $(pwd):/home/rstudio/$USER -p 8787:8787 bioconductor/devel_base

 

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