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docker
•
reset
2
votes
3
replies
243
views
How to use a specific Bioconductor version in custom Dockerfile
singularity
ensemblVEP
docker
8 weeks ago
jtaylor-predicine
• 0
0
votes
5
replies
470
views
How to add a BioConductor package to a Docker image based on rocker/shiny
docker
5 months ago • updated 4 months ago
Sam
▴ 10
0
votes
2
replies
510
views
does bioconductor/bioconductor_docker:RELEASE_X_Y install CRAN packages from a fixed snapshot?
mran
docker
cran
updated 12 months ago by
James W. MacDonald
62k • written 12 months ago by
mk
▴ 20
5
votes
4
replies
1.1k
views
XVector installation fails because zlib.h is not found
XVector
docker
Install
14 months ago
RobKo
▴ 10
1
vote
7
replies
2.6k
views
Installing Bioconductor packages in Docker
Bioconductor
DOCKER
RShiny
updated 5 months ago by
Sam
▴ 10 • written 2.1 years ago by
adklts
• 0
0
votes
1
reply
1.2k
views
Install using BiocManager::install() doesn't work in docker container
Bioconductor
docker
Install
updated 2.1 years ago by
Martin Morgan
25k • written 2.1 years ago by
Khai-Chuong
• 0
2
votes
2
replies
583
views
docker image with VariantAnnotation package?
docker
updated 2.6 years ago by
Martin Morgan
25k • written 2.6 years ago by
Paul Shannon
▴ 470
0
votes
1
reply
592
views
News:
New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release
package submission
docker
deadline
News
2.9 years ago • updated 2.8 years ago
shepherl
3.4k
2
votes
1
reply
534
views
Docker container with bioconductor and devtools
docker
updated 3.3 years ago by
shepherl
3.4k • written 3.3 years ago by
raven
• 0
0
votes
0
replies
541
views
Job:
Research Associate in Genomics Pipelines @ UEA, Norwich, UK
pipelines
NGS
Research associate
Docker
Job
3.6 years ago
Daniel Brewer
▴ 90
6
votes
9
replies
1.4k
views
Install Bioconductor 3.7
docker
BiocManager
BiocVersion
updated 3.8 years ago by
Martin Morgan
25k • written 3.8 years ago by
Michael Steinbaugh
▴ 70
1
vote
1
reply
1.4k
views
Job:
junior level position in proteomics/data science
proteomics
machine learning
git
docker
Job
updated 5.1 years ago by
karimse07
• 0 • written 5.3 years ago by
petyuk
▴ 70
0
votes
1
reply
985
views
Error installing flowDensity on latest docker container
R
package installation
docker
updated 5.2 years ago by
shepherl
3.4k • written 5.2 years ago by
bbrink
• 0
0
votes
0
replies
780
views
News:
Dockers have been updated for Bioc3.6 and Bioc3.7
docker
bioconductor
release
devel
News
5.3 years ago
shepherl
3.4k
2
votes
0
replies
742
views
News:
Bioconductor Dockers Updated
bioconductor
docker
News
5.8 years ago
shepherl
3.4k
3
votes
0
replies
971
views
News:
Updates to Bioconductor Dockers
docker
bioconductor
News
6.0 years ago
shepherl
3.4k
0
votes
1
reply
1.2k
views
apt-get problems with latest bioconductor/release_core docker
docker
6.2 years ago • updated 6.1 years ago
Karl Forner
▴ 70
0
votes
10
replies
1.3k
views
Ability to use a particular package via Docker
Docker
flowcore
dockerfile
6.4 years ago
jordan.xanthopoulos
• 0
0
votes
1
reply
1.0k
views
bioconductor/release_core:20160630 - BiocInstaller version 3.2 is too old for R version 3.3.1
docker
bioconductor
6.6 years ago
Karl Forner
▴ 70
1
vote
4
replies
1.9k
views
Bioconductor docker images without Rstudio-server?
docker
updated 6.6 years ago by
Dan Tenenbaum
★ 8.2k • written 7.1 years ago by
Thomas Sandmann
▴ 80
0
votes
0
replies
843
views
AnnotationData Packages version and pipeline management
docker
annotation
pipeline
6.7 years ago
Elena Grassi
▴ 10
7
votes
0
replies
3.0k
views
Tutorial:
New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation
genomicranges
visualization
docker
shiny
Tutorial
6.9 years ago
Vincent J. Carey, Jr.
6.6k
1
vote
3
replies
1.1k
views
confused about bioconductor/release_microarray:3.2 tag
docker
microarray
7.2 years ago
Karl Forner
▴ 70
4
votes
2
replies
4.9k
views
how can I install packages in docker/R/bioconductor so that they persist?
docker
7.2 years ago
anton.kratz
▴ 60
1
vote
10
replies
1.9k
views
Building mzR package under docker fails
mzR
docker
debian
centos
rocker
7.3 years ago
mjmg
• 0
3
votes
9
replies
1.7k
views
Bioconductor docker tags and release versions
docker
release
7.7 years ago • updated 7.3 years ago
Karl Forner
▴ 70
2
votes
4
replies
1.3k
views
no date tag included in docker ps output
docker
reproducibility
7.4 years ago
anton.kratz
▴ 60
3
votes
3
replies
1.9k
views
best way to terminate a Docker-based bioconductor/RStudio session?
docker
updated 7.4 years ago by
Dan Tenenbaum
★ 8.2k • written 7.4 years ago by
anton.kratz
▴ 60
5
votes
2
replies
1.8k
views
how can I access my local files (data, R-scripts) from the *docker* R/Bioconductor?
docker
ubuntu
updated 7.4 years ago by
Dan Tenenbaum
★ 8.2k • written 7.4 years ago by
anton.kratz
▴ 60
1
vote
4
replies
1.4k
views
how to install Rsamtools in bioconductor/devel_base docker
docker
Rsamtools
7.5 years ago
Ou, Jianhong
★ 1.3k
3
votes
6
replies
1.5k
views
Bioconductor Docker Development container
docker
bioc-devel
updated 7.7 years ago by
Dan Tenenbaum
★ 8.2k • written 7.7 years ago by
Nathan Sheffield
▴ 10
7
votes
0
replies
1.6k
views
News:
Announcing Docker containers for Bioconductor
docker
News
8.1 years ago
Dan Tenenbaum
★ 8.2k
32 results • Page
1 of 1
Recent ...
Replies
Answer: struggling to create a heatmap
by
ATpoint
★ 2.1k
I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
Answer: collapseReplicates error after tximeta
by
Michael Love
39k
The issue is that `collapseReplicates` just collapses `counts` and doesn't account for multiple assays which you need for e.g. Swish or oth…
Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
by
ATpoint
★ 2.1k
That having said, I recommend to inspect the MA-plots (`plotMA()`), at best the ones produced right from `res <- results(dds); plotMA(res)`…
Answer: Which genes are outliers in DESeq2?
by
ATpoint
★ 2.1k
You can take over some of the lines from `results()` to find them easily: ```r suppressPackageStartupMessages(library(DESeq2)) set.s…
Answer: Which genes are outliers in DESeq2?
by
Michael Love
39k
Outliers will have high maxCooks values in `mcols(dds)` -- the threshold is `qf(.99, p, n - p)` where n is sample size and p is number of c…
Votes
Significant reporter activity with mpralm function
Answer: I cannot install annotables package in Rstudio (macOS)
Answer: log2 of normalized counts for further analyzes
Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
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