Hi!
I was tring to install
install_github("sneumann/MetShot")
to finally install install_github("stanstrup/convert.waters.raw")
I get this error:
* installing *source* package 'MetShot' ...
** R
** inst
** tests
** preparing package for lazy loading
Advarsel i fun(libname, pkgname) :
mzR has been built against a different Rcpp version (0.11.6)
than is installed on your system (0.12.1). This might lead to errors
when loading mzR. If you encounter such issues, please send a report,
including the output of sessionInfo() to the Bioc support forum at
https://support.bioconductor.org/. For details see also
https://github.com/sneumann/mzR/wiki/mzR-Rcpp-compiler-linker-issue.
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Advarsel i library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE) :
there is no package called 'MetShot'
Fejl: loading failed
Kørsel stoppet
ERROR: loading failed
* removing '\\a00143.science.domain/bcg795/Documents/R/win-library/3.2/MetShot'
Error: Command failed (1)
My sessionInfo() is
R version 3.2.2 (2015-08-14) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 7 x64 (build 7601) Service Pack 1 locale: [1] LC_COLLATE=Danish_Denmark.1252 LC_CTYPE=Danish_Denmark.1252 LC_MONETARY=Danish_Denmark.1252 [4] LC_NUMERIC=C LC_TIME=Danish_Denmark.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.18.4 devtools_1.9.1 loaded via a namespace (and not attached): [1] httr_1.0.0 R6_2.1.1 magrittr_1.5 tools_3.2.2 curl_0.9.3 memoise_0.2.1 stringi_0.5-5 stringr_1.0.0 [9] digest_0.6.8
Should I downgrade Rcpp version?
Thank you
I am not sure if the
mzRwarning you get is the problem (I will still commit a fix to get rid of it later today). The (or one) issue, however, is clearly there is no package called 'MetShot'.I tried installingdevtools::install_github("sneumann/MetShot"), which worked on my computer.Could you load, or if not available, install the following dependencies and start again: CAMERA, xcms, XML, class and Biobase.
For the record, a new version of
mzR(2.3.3 in devel and 2.2.2 in release) that uses the latestRcppshould become available within 24 hours.