How can i use Feature PSSM in BioSeqClass packages?. i tried run this program:
if(interactive()){
file = file.path(path.package("BioSeqClass"), "example", "acetylation_K.fasta")
tmp = readAAStringSet(file)
proteinSeq = as.character(tmp)
## Need "blastpgp" program and a formated database. Database can be formated by "formatdb" program.
PSSM1 = featurePSSM(proteinSeq[1:2], start.pos=rep(1,2), stop.pos=rep(10,2), psiblast.path="blastpgp", database.path="./result1.fasta")
}
but, i got error messages:
Error in featurePSSM(proteinSeq[1:2], start.pos = rep(1, 2), stop.pos = rep(10, :
Do not have formated database file: ./result1.fasta.pin
How can i setting database.path? if my directory for database : C:\BLAST\db