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Answer: Data input for aracne2regulon function in viper package
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reef103
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Hi @luna_p , I'm sorry I didn;t see this before. The error might be due to a lack of match between the genes in the network (regulators and…
Comment: deseq2 normalized data with heatmap
by
Kevin Blighe
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Hey Ian, specifically just for the heatmap and/or the clustering, we can additionally scale and center the `vsd` or `rld` data.
The `scale…
Answer: Difference in mixed test for fry vs mroast
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Gordon Smyth
43k
That's a fair question and you're right that the fry/mroast help page doesn't give currently enough information about the mixed p-values.
…
Comment: deseq2 normalized data with heatmap
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Ian
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Hey @kevin , Thanks for the helpful posts!
I noticed in your link to this heatmap analysis, you used scale() and not vst(). However, in yo…
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