Showing : database • reset
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Database/tool that is able to tell me if the glutathionylation of a protein inhibits it?
protein database glutathionylation PTM
11 months ago Camelia • 0
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7
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587
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How can I convert the "Majority protein IDs" to "Gene names" (example below shown)?
MassSpectrometryData Proteome Database DEP
14 months ago tpm • 0
1
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1
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219
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can i get the database of bioconductor?
database
2.7 years ago jsdh120707 • 0
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Job: Computational Biology/Bioinformatics Post-doctoral position, Johns Hopkins University, Baltimore, USA
rnaseq next-generation sequencing database Job
4.5 years ago cleo.k.yang • 0
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3
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error while making database using Annotationforge package
annotationforge error database
updated 5.8 years ago by ★ 3.2k • written 5.8 years ago by ▴ 10
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setting database.path for extracting PSSM Feature in BioSeqClass
bioseqclass pssm database featurepssm feature
6.6 years ago greensandag • 0
2
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1
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863
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Update database names in the biomaRT package
biomaRT database
updated 7.3 years ago by ★ 1.3k • written 7.3 years ago by ▴ 20
7 results • Page 1 of 1
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Replies
Comment: ashr vs apeglm for interaction data by Ali Barry ▴ 30
Thanks, I'll trying playing a bit there. I have done some minor filtering already (requiring at least 5 counts in 10% of my samples, across…
Comment: ashr vs apeglm for interaction data by Michael Love 37k
I see why apeglm is conservative— the dispersion is very high within group. An idea would be to use ashr but do some additional filtering …
Comment: How to figure out the FC value from Limma by ATpoint ★ 1.2k
That’s an Excel problem, not a GEO/R problem or related to limma and Bioconductor.
Comment: ashr vs apeglm for interaction data by Ali Barry ▴ 30
Hi Michael, Plots attached. Many of the large fold changes with `ashr` are driven by one sample per group, but a few are maybe a bit more …
Comment: regression analysis for epic array methylation data using limma by nabiyogesh ▴ 10
Thanks! I have tried this; I am not sure after that how to find logeGFR associated probe? and also, how to filter significant probe? …
Votes
Answer: How to properly use DESeq2 for an experiment
Comment: ashr vs apeglm for interaction data
Comment: How to figure out the FC value from Limma
Answer: Warnings when using "ashr" in lfcshrinkage for DESeq2
Answer: Warnings when using "ashr" in lfcshrinkage for DESeq2
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