Bioconductor Database

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655

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protein database glutathionylation PTM

3.9 years ago Camelia • 0

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3.9k

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MassSpectrometryData Proteome Database DEP

4.2 years ago tpm • 0

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660

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database

5.7 years ago jsdh120707 • 0

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1.3k

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rnaseq next-generation sequencing database Job

7.5 years ago cleo.k.yang • 0

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1.7k

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annotationforge error database

updated 8.8 years ago by Guido Hooiveld ★ 4.1k • written 8.8 years ago by kritikamish99 ▴ 10

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1.1k

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bioseqclass pssm database featurepssm feature

9.6 years ago greensandag • 0

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1.4k

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biomaRT database

updated 10.3 years ago by Julian Gehring ★ 1.3k • written 10.3 years ago by aspadotto ▴ 20

7 results • Page 1 of 1

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Comment: Check removeBatchEffect effectiveness by Gordon Smyth 52k

Both of your matrices, `design_batcheffects` and `design_timepoint`, span the intercept term, which will cause a warning about NA coefficie…

Comment: DiffBind - question on the use of filtered or unfiltered input data by sloperun3az • 0

Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…

Comment: compute_fasta_digest does not match Salmon index hash by sloperun3az • 0

The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …

Comment: parameters of filterByExpr by Paul Harrison ▴ 110

It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…

Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k

voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…

Votes

Comment: Check removeBatchEffect effectiveness

Answer: Check removeBatchEffect effectiveness

A: what should I do with many zero counts from Salmon quantification

Comment: parameters of filterByExpr

GAlignments Cigar to GRanges

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