Showing : database • reset
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Database/tool that is able to tell me if the glutathionylation of a protein inhibits it?
protein database glutathionylation PTM
2.2 years ago Camelia • 0
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7
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2.5k
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How can I convert the "Majority protein IDs" to "Gene names" (example below shown)?
MassSpectrometryData Proteome Database DEP
2.5 years ago tpm • 0
1
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1
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368
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can i get the database of bioconductor?
database
4.0 years ago jsdh120707 • 0
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926
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Job: Computational Biology/Bioinformatics Post-doctoral position, Johns Hopkins University, Baltimore, USA
rnaseq next-generation sequencing database Job
5.8 years ago cleo.k.yang • 0
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3
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1.1k
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error while making database using Annotationforge package
annotationforge error database
updated 7.2 years ago by ★ 3.7k • written 7.2 years ago by ▴ 10
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setting database.path for extracting PSSM Feature in BioSeqClass
bioseqclass pssm database featurepssm feature
8.0 years ago greensandag • 0
2
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1
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1.0k
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Update database names in the biomaRT package
biomaRT database
updated 8.6 years ago by ★ 1.3k • written 8.6 years ago by ▴ 20
7 results • Page 1 of 1
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Comment: DataFrame Construction With Non-standard Column by Hervé Pagès 16k
SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…
Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu by swbarnes2 ★ 1.3k
The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…
Answer: Remove duplicates of colData in TreeSummarizedExperiment by Michael Love 40k
Copying my code from Slack for posterity. James' code is more streamlined for this step I think. ``` # make a dataset that has duplicate s…
Comment: DataFrame Construction With Non-standard Column by James W. MacDonald 63k
Oh, ok. I understand. Technically both should work according to what the help page for `DataFrame` says (both `SimpleList` and `list` have …
Comment: DeSeq2 design fails (full model matrix is less than full rank) by Basti ▴ 720
As recommended, you can only perform ~group. You can use contrasts do perform the comparison AA5 vs FHIN1 (see [DESeq2 vignette][1]), but t…
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Answer: Further analysis after limma regression output
A: collapseReplicates in DESeq2
Answer: DataFrame Construction With Non-standard Column
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
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