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database
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144
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Database/tool that is able to tell me if the glutathionylation of a protein inhibits it?
protein
database
glutathionylation
PTM
11 months ago
Camelia
• 0
1
vote
7
replies
587
views
How can I convert the "Majority protein IDs" to "Gene names" (example below shown)?
MassSpectrometryData
Proteome
Database
DEP
14 months ago
tpm
• 0
1
vote
1
reply
219
views
can i get the database of bioconductor?
database
2.7 years ago
jsdh120707
• 0
0
votes
0
replies
647
views
Job:
Computational Biology/Bioinformatics Post-doctoral position, Johns Hopkins University, Baltimore, USA
rnaseq
next-generation sequencing
database
Job
4.5 years ago
cleo.k.yang
• 0
0
votes
3
replies
734
views
error while making database using Annotationforge package
annotationforge
error
database
updated 5.8 years ago by
Guido Hooiveld
★ 3.2k • written 5.8 years ago by
kritikamish99
▴ 10
0
votes
0
replies
598
views
setting database.path for extracting PSSM Feature in BioSeqClass
bioseqclass
pssm
database
featurepssm
feature
6.6 years ago
greensandag
• 0
2
votes
1
reply
863
views
Update database names in the biomaRT package
biomaRT
database
updated 7.3 years ago by
Julian Gehring
★ 1.3k • written 7.3 years ago by
aspadotto
▴ 20
7 results • Page
1 of 1
Recent ...
Replies
Comment: ashr vs apeglm for interaction data
by
Ali Barry
▴ 30
Thanks, I'll trying playing a bit there. I have done some minor filtering already (requiring at least 5 counts in 10% of my samples, across…
Comment: ashr vs apeglm for interaction data
by
Michael Love
37k
I see why apeglm is conservative— the dispersion is very high within group. An idea would be to use ashr but do some additional filtering …
Comment: How to figure out the FC value from Limma
by
ATpoint
★ 1.2k
That’s an Excel problem, not a GEO/R problem or related to limma and Bioconductor.
Comment: ashr vs apeglm for interaction data
by
Ali Barry
▴ 30
Hi Michael, Plots attached. Many of the large fold changes with `ashr` are driven by one sample per group, but a few are maybe a bit more …
Comment: regression analysis for epic array methylation data using limma
by
nabiyogesh
▴ 10
Thanks! I have tried this; I am not sure after that how to find logeGFR associated probe? and also, how to filter significant probe? …
Votes
Answer: How to properly use DESeq2 for an experiment
Comment: ashr vs apeglm for interaction data
Comment: How to figure out the FC value from Limma
Answer: Warnings when using "ashr" in lfcshrinkage for DESeq2
Answer: Warnings when using "ashr" in lfcshrinkage for DESeq2
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andrebolerbarros
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Guido Hooiveld
★ 3.2k
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