How to convert a bam file into tsv file format?
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@malikbashirkhan2-8918
Last seen 8.5 years ago
Pakistan

i have converted a sam file into bam. then sorted it and then indexed it .

now i just want to convert a this sorted, indexed  file into tsv file format.

bioinformatics • 3.2k views
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What columns would you like in your tsv file?

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i would like to convert a bam file completly into tsv file.

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But the SAM file you started with already contained all the information in tsv format. If it's small enough to fit into excel, just use excel to import it.

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@gordon-smyth
Last seen 8 hours ago
WEHI, Melbourne, Australia

It does seem that your queries have already been answered on Biostars:

  https://www.biostars.org/p/160176/

  https://www.biostars.org/p/160012/

See also

  How to convert bia file to tsv file

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that question also posted by me ..but thats not the answer of my question.

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