ShortRead Error in slot(object, ".srlist")

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sbrown36 • 0

@sbrown36-8949

Last seen 9.3 years ago

United States

Hello,

I am an extremely new used to R and Bioconductor. I am trying to use ReadShort, and keep coming up with this error. Is there an easy fix to this, and something that is just a stupid mistake?

Thank you,

Sarah

> library(ShortRead)
> fls <- dir("~/woodratGenome", "*fastq$", full=TRUE)
> qaSummary <- qa(fls, type="fastq")
Error in slot(object, ".srlist") :
  cannot get a slot (".srlist") from an object of type "list"

software error ShortRead • 1.6k views

ADD COMMENT • link updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by sbrown36 • 0

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Hi Sarah -- can you update your post to include the output of the sessionInfo() command, and then make a comment here, please?

ADD REPLY • link 9.3 years ago Martin Morgan 25k

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Martin,

I figured it out. I somehow had loaded packages under different versions of R.

It is working now! Thank you

Sarah

ADD REPLY • link 9.3 years ago sbrown36 • 0

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