Hello,
I am currently trying to use the ChAMP Bioconductor package to process my methylation data.
Here is my sessionInfo():
R version 3.1.2 (2014-10-31)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] ChAMP_1.4.1
[2] Illumina450ProbeVariants.db_1.1.1
[3] ChAMPdata_1.1.2
[4] shiny_0.12.2
[5] minfiData_0.7.1
[6] IlluminaHumanMethylation450kanno.ilmn12.hg19_0.2.1
[7] IlluminaHumanMethylation450kmanifest_0.4.0
[8] minfi_1.12.0
[9] bumphunter_1.6.0
[10] locfit_1.5-9.1
[11] iterators_1.0.8
[12] foreach_1.4.3
[13] Biostrings_2.34.1
[14] XVector_0.6.0
[15] lattice_0.20-33
[16] MethylAid_1.0.2
[17] RSQLite_1.0.0
[18] DBI_0.3.1
[19] GenomicFeatures_1.18.7
[20] AnnotationDbi_1.28.2
[21] Biobase_2.26.0
[22] GenomicRanges_1.18.4
[23] GenomeInfoDb_1.2.5
[24] IRanges_2.0.1
[25] S4Vectors_0.4.0
[26] BiocGenerics_0.12.1
I looked into some responses to other people having this same error from https://groups.google.com/forum/#!topic/epigenomicsforum/w1ytMQkA3eI but was not able to find a solution to the problem.
Please let me know if I need to provide any further information.
Thanks,
Julian
