Showing : ChAMP • reset
0
votes
3
replies
1.7k
views
ChAMP trouble reading csv file
ChAMP
written 2.6 years ago by • 0
1
vote
18
replies
7.7k
views
error in ChAMP loading file
ChAMP
updated 8 months ago by • 0 • written 3.3 years ago by • 0
0
votes
8
replies
2.0k
views
Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
written 2.3 years ago by • 0
2
votes
10
replies
4.8k
views
Problem at champ.load
ChAMPdata ChAMP
updated 11 months ago by • 0 • written 2.9 years ago by • 0
0
votes
1
reply
760
views
ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
ChAMP
updated 14 months ago by • 0 • written 14 months ago by • 0
0
votes
0
replies
735
views
Errors trying to load EPIC v2 data in ChAMP
ChAMP ChAMPdata
15 months ago elgomez • 0
1
vote
9
replies
3.9k
views
Error using champ.import
ChAMP EPICv2
updated 16 months ago by • 0 • written 2.7 years ago by • 0
1
vote
1
reply
972
views
Empty Results from champ.DMP Despite Expected Output
MethylationArray ChAMP R
updated 18 months ago by 68k • written 18 months ago by • 0
0
votes
4
replies
1.1k
views
Failed to install geneLenDataBase
geneLenDataBase ChAMP
updated 19 months ago by 4.3k • written 19 months ago by • 0
4
votes
12
replies
6.7k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 19 months ago by ▴ 230 • written 2.3 years ago by ▴ 20
0
votes
1
reply
1.0k
views
ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray methylationArrayAnalysis ChAMP
updated 15 months ago by • 0 • written 20 months ago by • 0
0
votes
1
reply
780
views
single excel file containing methylation beta values does not get loaded in ChAMP
ChAMP
updated 20 months ago by ▴ 780 • written 20 months ago by • 0
0
votes
3
replies
2.1k
views
ChAMP not available for bioconductor 3.19
Bioconductor ChAMP
updated 21 months ago by 4.3k • written 21 months ago by • 0
2
votes
3
replies
1.3k
views
Problem installing ChAMP on a MacBook
ChAMP
updated 21 months ago by 4.3k • written 21 months ago by • 0
0
votes
7
replies
2.2k
views
ChAMP installation issue
Cha ChAMP
updated 21 months ago by 68k • written 21 months ago by • 0
2
votes
4
replies
1.8k
views
Error EPICv2 ChAMP
ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP
updated 22 months ago by 68k • written 22 months ago by • 0
1
vote
2
replies
809
views
Error in champ.load(): The following specified files do not exist
ChAMP
22 months ago Sherin • 0
1
vote
1
reply
1.9k
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
0
votes
0
replies
791
views
how to solve this error?
ChAMPdata ChAMP
2.0 years ago Meghana • 0
0
votes
4
replies
4.0k
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP EPICv2
updated 15 months ago by • 0 • written 2.1 years ago by • 0
0
votes
0
replies
745
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks ChAMP
2.1 years ago Thalita • 0
2
votes
1
reply
1.5k
views
ChAMP can't be found in Bioc3.18?
ChAMP
2.3 years ago ramonfallon ▴ 20
0
votes
7
replies
3.0k
views
error with champ.load
ChAMP champ methylation
updated 2.5 years ago by • 0 • written 5.9 years ago by • 0
3
votes
7
replies
7.2k
views
error with champ.load
champ
written 8.3 years ago by ▴ 10
0
votes
2
replies
2.0k
views
Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 2.8 years ago by • 0 • written 5.0 years ago by • 0
0
votes
3
replies
1.3k
views
Error in champ.load() function
ChAMP
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
0
votes
2
replies
2.1k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
0
votes
2
replies
1.9k
views
Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
2.9 years ago • updated 2.8 years ago arisarkar88 ▴ 40
0
votes
1
reply
1.2k
views
Unable to create pd file for ChAMP analysis
ChAMP
updated 20 months ago by • 0 • written 2.9 years ago by • 0
0
votes
0
replies
773
views
Cannot generate plots when calling ChAMP
ChAMP DMP.GUI
2.9 years ago Kan • 0
0
votes
2
replies
1.4k
views
error in champ.SVD
svd methylation champ
updated 2.9 years ago by 4.3k • written 2.9 years ago by • 0
0
votes
3
replies
2.0k
views
ChAMP filter bug when using beta matrix and pd as input
ChAMP
written 8.7 years ago by • 0
1
vote
1
reply
1.7k
views
champ.load IDAT files from subdirectories
ChAMP
updated 3.0 years ago by ▴ 780 • written 3.0 years ago by • 0
0
votes
1
reply
2.2k
views
Trying to generate a pd file for ChAMP from idat files with no array or slide information in file names
ChAMP
updated 3.2 years ago by 68k • written 3.2 years ago by ▴ 10
1
vote
1
reply
1.3k
views
In readLines(csvfile)
pipeline testdata ChAMP
updated 3.2 years ago by 68k • written 3.2 years ago by • 0
0
votes
1
reply
1.1k
views
Champ.impute - myLoad not found
ChAMP
updated 3.4 years ago by ▴ 780 • written 3.4 years ago by • 0
0
votes
3
replies
1.9k
views
methylated/unmethylated media threshold (EPIC assay)
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 ChAMP minfi
3.9 years ago • updated 3.8 years ago ramonfallon ▴ 20
0
votes
1
reply
1.9k
views
champ.SVD() error, assumes standard class() function will return single string
ChAMP
updated 3.8 years ago by ▴ 780 • written 3.8 years ago by ▴ 20
0
votes
7
replies
4.1k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 3.3 years ago by 68k • written 3.8 years ago by • 0
0
votes
4
replies
2.3k
views
Problem installing ChAMP package.
ChAMP
3.9 years ago Yu-min • 0
0
votes
1
reply
1.6k
views
How to control for confounders in champ.DMP and champ.DMR?
ChAMP
updated 3.9 years ago by ▴ 780 • written 3.9 years ago by • 0
0
votes
1
reply
1.4k
views
Error in ChAMP GUI
ChAMP shiny ChAMPdata
updated 4.0 years ago by • 0 • written 4.0 years ago by • 0
1
vote
2
replies
4.0k
views
Error using ChAMP SVD analysis
ChAMP
updated 3.0 years ago by • 0 • written 4.6 years ago by • 0
0
votes
0
replies
1.4k
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData ChAMP
4.1 years ago behr201 • 0
0
votes
3
replies
1.7k
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata ChAMP
updated 4.2 years ago by ▴ 780 • written 4.2 years ago by • 0
0
votes
0
replies
1.3k
views
Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
4.2 years ago Paulina • 0
3
votes
4
replies
14k
views
Problem loading R packages on MacBook Pro
newpackage ChAMP
updated 3.4 years ago by • 0 • written 4.3 years ago by • 0
0
votes
2
replies
1.4k
views
problems opening ChAMP
ChAMP
updated 4.3 years ago by ▴ 780 • written 4.3 years ago by • 0
0
votes
1
reply
1.7k
views
error in champ.norm
champ.norm ChAMP
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by • 0
0
votes
0
replies
1.2k
views
ChAMP.CNA analysis
CopyNumberPlots ChAMP CopyNumberVariation CopyNumberVariationData
4.5 years ago FWNL15 • 0
156 results • Page 1 of 4
Recent ...
Replies
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by strawberry3 • 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Awards • All
Popular Question to Matan G. ▴ 60
Popular Question to Jaqueline • 0
Scholar to Gordon Smyth 53k
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to chirag.parsania ▴ 10
Locations • All
Germany, 14 minutes ago
United States, 17 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
United States, 1 hour ago
The city by the bay, 1 hour ago
Traffic: 792 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6