Hi,
I am unable to install the GO.db package. Below is my session info: BioC is up to date ... any help would be appreciated!
> sessionInfo()
R version 3.2.2 (2015-08-14)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.3 LTS
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.20.0
loaded via a namespace (and not attached):
[1] tools_3.2.2
> source("http://bioconductor.org/biocLite.R")
Bioconductor version 3.2 (BiocInstaller 1.20.0), ?biocLite for help
> biocLite()
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.2 (BiocInstaller 1.20.0), R 3.2.2 (2015-08-14).
> biocValid()
[1] TRUE
> biocLite("GO.db")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.2 (BiocInstaller 1.20.0), R 3.2.2 (2015-08-14).
Installing package(s) ‘GO.db’
trying URL 'https://bioconductor.org/packages/3.2/data/annotation/src/contrib/GO.db_3.2.2.tar.gz'
Content type 'application/x-gzip' length 31248918 bytes (29.8 MB)
==================================================
downloaded 29.8 MB
* installing *source* package ‘GO.db’ ...
** R
** inst
Warning in file.append(to[okay], from[okay]) :
write error during file append
** preparing package for lazy loading
Error in lazyLoadDBinsertValue(data, datafile, ascii, compress, envhook) :
write failed
ERROR: lazy loading failed for package ‘GO.db’
* removing ‘/usr/local/lib/R/site-library/GO.db’
The downloaded source packages are in
‘/tmp/Rtmp068yxr/downloaded_packages’
Warning message:
In install.packages(pkgs = doing, lib = lib, ...) :
installation of package ‘GO.db’ had non-zero exit status
>
