Looking for a package allowing Affymetrix MoGene2.1ST processing
1
0
Entering edit mode
steppydeklin ▴ 10
@steppydeklin-9271
Last seen 3.8 years ago
European Union

Hello, 

I have a set of MoGene 2.1ST microarrays. Does anyone have some experience with the analysis of these chips? I tried the affy package without success? Is there a package available?

Thanks

Stephane

affy xps rma oligo • 795 views
ADD COMMENT
0
Entering edit mode
Guido Hooiveld ★ 3.5k
@guido-hooiveld-2020
Last seen 2 days ago
Wageningen University, Wageningen, the …

The 'affy' package will not work; you indeed have to go for 'Oligo' or 'XPS'.

James MacDonald has addressed this question many times on the list, see e.g: A: how to normalize mogene 2.1 st array? and A: Annotation for a MoGene-2_0-st Chip/Arry Data and A: normalizing all affymetrix array type with affy package impossible with R 3.x ?

 

^^ don't forget to adapt the above-listed code(s) to your array type.

 

ADD COMMENT

Login before adding your answer.

Traffic: 314 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6