I was using featureCounts function from the R package ("Rsubread"). I need to count reads which are mapped to multiple regions but want to represent that as 1/n (where n= number of alignments). However I am unable to find the argument 'fraction' in the R function featureCounts.
DEseq2 doesn't take fraction values, do you suggest to round up those values? if yes then can we implement that in featureCounts.
Thank you for your advice on the above points.