Question: UPC RNA-Seq individual samples
0
gravatar for Jo
4.0 years ago by
Jo10
Jo10 wrote:

Hello,

I am trying to do a UPC normalization on a GEO dataset. Is there a way to produce read count files such that I can do the UPC normalization on all samples at once rather than each sample individually? I want to have one output file for the dataset. Is this possible?

Please let me know.

rnaseq scan.upc upc • 564 views
ADD COMMENTlink modified 4.0 years ago by Stephen Piccolo560 • written 4.0 years ago by Jo10
Answer: UPC RNA-Seq individual samples
0
gravatar for Stephen Piccolo
4.0 years ago by
United States
Stephen Piccolo560 wrote:

As stated in the documentation, you can specify multiple input files using the inFilePattern parameter of the UPC_RNASeq function. You would specify the input files using wildcard characters. Alternatively, you can put the data in an ExpressionSet object and process it using UPC_Generic_ExpressionSet.

ADD COMMENTlink written 4.0 years ago by Stephen Piccolo560
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