Problems using the savR package
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@merellastefania-8220
Last seen 8.4 years ago
Italy

Dear all,

I am using the savR package to create plots and tables regarding the quality feature of my Illumina RUNs. In particular the sequencing is performed with MiSeq sequencer.

I have been able to use the package for a lot of RUNS but when performing the last one I received this error:

library(savR)
Loading required package: ggplot2
run_folder="150902_M03773_0005_000000000-AG95J"
fc=savR(run_folder)
tile_metrics=tileMetrics(fc)
Error in tileMetrics(fc) : trying to get slot "data" from an object of a basic class ("NULL") with no slots

Any help is appreciate.

Thanks,

Stefania

sessionInfo()
R version 3.2.2 (2015-08-14)
Platform: x86_64-redhat-linux-gnu (64-bit)
Running under: CentOS release 6.7 (Final)

 

 

savR illumina • 1.0k views
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