So i decided to not use this approach and realized that cn.MOPS produces a PDF, the issue I am having is that i cannot define where the PDF should be stored and also cannot chose a filename. Any ideas how I could accomplish this?
The plot functions of cn.MOPS are typical R plot functions that send the plot information to an open device. If you open a PDF device by "pdf("myPdf.pdf")" and then use the plotting function of cn.MOPS (parameter "toFile=TRUE") it should work. I am not sure what the problem is with the Python interface.
Could you give me the R code that you use for plotting?