Question

Using custom expected R to estimate LRR with GWASTools

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Vinicius Henrique da Silva ▴ 40

@vinicius-henrique-da-silva-6713

Last seen 18 months ago

Brazil

It is possible to use the functions BAFfromGenotypes and/or getLogRRatio while setting custom Rexpected values?
I am assuming the model at page 10 of the manual (http://bioconductor.org/packages/release/bioc/vignettes/GWASTools/inst/doc/Affymetrix.pdf).

The only option that I found was to change the estimation from plate to the entire study.

gwastools • 1.2k views

ADD COMMENT • link updated 8.8 years ago by Stephanie M. Gogarten ▴ 870 • written 8.8 years ago by Vinicius Henrique da Silva ▴ 40

score 0 · Answer 1 · 2016-01-26

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Stephanie M. Gogarten ▴ 870

@stephanie-m-gogarten-5121

Last seen 4 months ago

University of Washington

No, that option is not available.

ADD COMMENT • link 8.8 years ago Stephanie M. Gogarten ▴ 870