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gwastools
•
reset
0
votes
4
replies
1.6k
views
how to save subsetted GDS file
gwastools
written 5.6 years ago by
Adrienne Stilp
▴ 30
0
votes
0
replies
287
views
Human to mouse SNP conversion
liftOver
SNP
GWASTools
8 months ago
bonheur
• 0
2
votes
4
replies
580
views
Question about GWASTools gdsSubset
GWASTools
gdsSubset
written 9 months ago by
SuperD
• 0
0
votes
1
reply
858
views
SNP annotation
SNPRelate
SNP
GWASTools
Annotation
GWASdata
updated 22 months ago by
Stephanie M. Gogarten
▴ 870 • written 24 months ago by
Adrián
• 0
1
vote
4
replies
1.2k
views
Errors when trying to install 'gwscat' on ubuntu with R 4.0.3
GWASTools
gwascat
updated 3.0 years ago by
Mike Smith
★ 6.2k • written 3.0 years ago by
wmov98
▴ 10
0
votes
1
reply
638
views
using GENESIS R package with non-human species
genesis
gwastools
3.4 years ago
Stephanie M. Gogarten
▴ 870
4
votes
2
replies
1.6k
views
Imputed dosages in GENESIS
genesis
gwastools
seqarray
5.1 years ago • updated 4.8 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
773
views
GWASTools vcfWrite function
gwastools
5.6 years ago
Stephanie M. Gogarten
▴ 870
1
vote
1
reply
689
views
Missing normalized x, normalized y, baf and logrrratio values
gwastools
updated 5.7 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.7 years ago by
dharia.priyadarshani
• 0
0
votes
2
replies
1.3k
views
Question on 'gdsSubset' function
GWASTools
6.1 years ago
yasuhito.nannya
• 0
0
votes
2
replies
1.6k
views
Creating Intensity GDS file for the R package GWAStools
gwastools
idat
gds format
updated 6.3 years ago by
Stephanie M. Gogarten
▴ 870 • written 6.3 years ago by
catbriggsm
• 0
0
votes
6
replies
2.0k
views
Error using readVcf
gwastools
variantannotation
updated 6.4 years ago by
Stephanie M. Gogarten
▴ 870 • written 6.4 years ago by
Lna
• 0
1
vote
5
replies
1.6k
views
"set genotype" function for gds?
gwastools
gds
6.8 years ago
Lna
• 0
3
votes
2
replies
1.6k
views
Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate
GWASTools
updated 7.5 years ago by
Adrienne Stilp
▴ 30 • written 7.5 years ago by
Vinicius Henrique da Silva
▴ 40
1
vote
14
replies
3.4k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools
qualitycontrol
HumanOmni5-4BeadChip
GenomeStudio
illumina
updated 7.6 years ago by
Stephanie M. Gogarten
▴ 870 • written 7.6 years ago by
Lna
• 0
0
votes
1
reply
1.2k
views
Error with FunciSNP
snp
R
gwastools
7.6 years ago
musomilan
• 0
0
votes
1
reply
975
views
Using custom expected R to estimate LRR with GWASTools
gwastools
updated 7.8 years ago by
Stephanie M. Gogarten
▴ 870 • written 7.8 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
1
reply
1.6k
views
Meaning of NA for LRR and BAF values estimated with GWASTools
gwastools
lrr
baf
NA
updated 8.0 years ago by
Stephanie M. Gogarten
▴ 870 • written 8.0 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
3
replies
1.4k
views
Importing affymetrix genotype calls with GWASTools
gwastools
genotype
affymetrix microarrays
updated 8.1 years ago by
Stephanie M. Gogarten
▴ 870 • written 8.1 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
1
reply
977
views
Error in importing signals with createAffyIntensityFile (GWASTools)
gwastools
software error
updated 8.1 years ago by
Stephanie M. Gogarten
▴ 870 • written 8.1 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
990
views
Joint test for interactions in GWASTools
gwastools
updated 8.2 years ago by
Stephanie M. Gogarten
▴ 870 • written 8.2 years ago by
chintanm
• 0
0
votes
2
replies
1.6k
views
Permutations of GWAS for GWASTools
gwastools
updated 8.2 years ago by
Stephanie M. Gogarten
▴ 870 • written 8.2 years ago by
chintanm
• 0
2
votes
1
reply
1.7k
views
PLINK features available in GWASTools?
gwastools
8.6 years ago
Stephanie M. Gogarten
▴ 870
0
votes
5
replies
1.5k
views
GWASTools assocTestCPH on cluster vs. computer
gwastools
updated 8.9 years ago by
Stephanie M. Gogarten
▴ 870 • written 9.0 years ago by
mrynerson
• 0
0
votes
2
replies
1.4k
views
Errors when attempting to run association tests in GWASTools
gwastools
9.1 years ago
mrynerson
• 0
0
votes
2
replies
1.1k
views
GWASTools: assocTestRegression, forcing the analysis to use reference allele
GWASTools
GWASTools
updated 9.3 years ago by
Stephanie M. Gogarten
▴ 870 • written 9.3 years ago by
Guest User
★ 12k
0
votes
0
replies
894
views
GWASTools: Sandwich SE
GWASTools
GWASTools
9.4 years ago
Adrienne Stilp
▴ 30
0
votes
1
reply
1.3k
views
GWASTools instalation problem
GWASTools
GWASTools
updated 9.4 years ago by
Dan Tenenbaum
★ 8.2k • written 9.4 years ago by
Lopez Bobeda,Jose R
▴ 10
0
votes
1
reply
2.3k
views
help with analysis of genotyping data from Illumina HumanOmni5-4v1_B chip
SNP
VariantAnnotation
Annotation
probe
VariantAnnotation
GWASTools
SNP
VariantAnnotation
updated 9.5 years ago by
Stephanie M. Gogarten
▴ 870 • written 9.5 years ago by
Abhishek Pratap
▴ 160
0
votes
0
replies
934
views
small GWASTools patch to allow to use already built gds objects in Genotype Readers
GWASTools
GWASTools
9.7 years ago
Karl Forner
▴ 70
0
votes
0
replies
1.1k
views
Fwd: GWASTools
cdf
convert
GWASTools
cdf
convert
GWASTools
9.9 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
1.7k
views
snpStats/GWASTools conversion
cdf
convert
snpMatrix
snpStats
GWASTools
cdf
convert
snpMatrix
snpStats
GWASTools
10.2 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
2.1k
views
GWASTools
cdf
GWASTools
cdf
GWASTools
10.3 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
1.3k
views
GWATools use in creating ncdf files
SNP
Annotation
cdf
GWASTools
SNP
Annotation
cdf
GWASTools
updated 10.4 years ago by
Stephanie M. Gogarten
▴ 870 • written 10.4 years ago by
Sam Rose
▴ 60
0
votes
5
replies
1.6k
views
GWATools use in creating ncdf files
SNP
Annotation
cdf
GWASTools
SNP
Annotation
cdf
GWASTools
updated 10.5 years ago by
Sam Rose
▴ 60 • written 10.5 years ago by
Stephanie M. Gogarten
▴ 870
0
votes
3
replies
1.3k
views
GWATools use in creating ncdf files
SNP
cdf
GWASTools
SNP
cdf
GWASTools
updated 10.5 years ago by
Sam Rose
▴ 60 • written 10.5 years ago by
Stephanie M. Gogarten
▴ 870
0
votes
3
replies
2.4k
views
Affymetrix CEL files
cdf
GWASTools
cdf
GWASTools
updated 10.6 years ago by
James W. MacDonald
64k • written 10.6 years ago by
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
775
views
GWATools use in creating ncdf files
cdf
GWASTools
cdf
GWASTools
10.6 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
1.8k
views
GWASTools
Organism
GWASTools
Organism
GWASTools
SNPRelate
10.7 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
1.1k
views
A question about GWASTools package
cdf
GWASTools
cdf
GWASTools
10.7 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
1.4k
views
GWASTools for analyzing Canine_HD genotyping data
Organism
cdf
GWASTools
Organism
cdf
GWASTools
10.8 years ago
Stephanie M. Gogarten
▴ 870
0
votes
2
replies
1.1k
views
GWASTools mendelList Constructor
GWASTools
GWASTools
updated 11.2 years ago by
Stephanie M. Gogarten
▴ 870 • written 11.2 years ago by
Samuel Younkin
▴ 60
42 results • Page
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Comment: Problem loading HDF5Array in R 4.3.2
by
Mike Smith
★ 6.2k
Great, I'm glad it worked. It's frustrating that the binary doesn't work for you; that shouldn't happen! However I'm not sure how to go a…
Comment: It's possible to use clusterProfiler without an annotationDBI package
by
Guido Hooiveld
★ 3.8k
No, I don't. Confirm that `geneList` has the expected format. What is the outcome of `geneList[1:5]`, `str(geneList)` and `class(geneList)…
Comment: It's possible to use clusterProfiler without an annotationDBI package
by
Guido Hooiveld
★ 3.8k
Did you try it yourselves? But the answer is yes.
Comment: It's possible to use clusterProfiler without an annotationDBI package
by
nromerov
• 0
Also do you know if the gaphical functions as dotplot, enrichmap and cnetplot works on this generic analysis? still sorry for bothering you
Comment: It's possible to use clusterProfiler without an annotationDBI package
by
nromerov
• 0
Thank you very much for your help iu was really deseperate about this that i wasn't thinking too well yesterday im really gratefull with yo…
Votes
Comment: Problem loading HDF5Array in R 4.3.2
Answer: gseGO input list
Comment: Problem loading HDF5Array in R 4.3.2
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
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