Question: goseq: Can't find mm10/geneSymbol length data in genLenDataBase...
24 months ago by
Bohdan Khomtchouk • 10
Bohdan Khomtchouk • 10 wrote:
Has anyone else encountered any issues with using mm10 in the goseq package:
> pwf <- nullp(genes, "mm10", "geneSymbol") Can't find mm10/geneSymbol length data in genLenDataBase... Found the annotaion package, TxDb.Mmusculus.UCSC.mm10.knownGene Trying to get the gene lengths from it. Warning message: In pcls(G) : initial point very close to some inequality constraints
mm9 works absolutely fine with geneSymbol but mm10 does not. Is this a bug?
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