Showing : goseq • reset
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444
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GOseq Probability Weight Function bad fit
goseq
written 5 months ago by • 0
0
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1
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931
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News: Gene Set Enrichment Analysis in Bioconductor course
GSEABase GeneSetEnrichment goseq
12 months ago info ▴ 10
5
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9
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3.0k
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Inconsistent nullp and goseq enrichment results across operating systems
goseq
written 20 months ago by • 0
2
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3
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1.4k
views
package goseq seems to be not available on the latest version of R
goseq
updated 22 months ago by 53k • written 22 months ago by ▴ 20
1
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2
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842
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supportedOrganisms() in goseq producing Error in names(trackIds)
goseq Bioconductor rtracklayer
24 months ago thomas • 0
1
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4
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1.4k
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goseq, warning and strange plot from nullp
goseq
2.1 years ago boczniak767 ▴ 740
0
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1
reply
1.2k
views
Downstream analysis with Differentially Expressed Genes
DESeq2 GO goseq FunctionalAnnotation
updated 3.3 years ago by ▴ 10 • written 3.3 years ago by • 0
0
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5
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3.8k
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GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 3.8 years ago by 68k • written 3.8 years ago by ▴ 30
0
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2
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1.6k
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goseq: Wallenius Vs Fisher's Noncentral Hypergeometric Distribution
goseq
3.8 years ago Steve Pederson ▴ 170
1
vote
2
replies
1.6k
views
Pathway analysis of RNAseq data using goseq package
Pathways goseq RNASeqData
4.0 years ago • updated 3.9 years ago m.glymenaki • 0
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0
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1.3k
views
Gage pathway analysis of RNAseq graphical representation as dot plot
gage plot RNASeq goseq
updated 4.0 years ago by 43k • written 4.0 years ago by • 0
1
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10
replies
4.0k
views
How to run Goseq for list of ensembl gene IDs
goseq
4.9 years ago Lucky • 0
1
vote
4
replies
2.3k
views
goseq package loading issues
DESeq2 goseq
5.0 years ago avinashi • 0
3
votes
9
replies
2.9k
views
Warning message when performing Gene Ontology analysis with goseq using hg38
goseq
updated 5.0 years ago by 68k • written 5.0 years ago by • 0
2
votes
3
replies
3.1k
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 5.1 years ago by 68k • written 5.1 years ago by ▴ 30
2
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2
replies
1.7k
views
Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 5.2 years ago by 68k • written 5.2 years ago by • 0
0
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1
reply
1.5k
views
non-native GO annotation cannot be successfully introduced into Goseq
goseq rnaseq r
updated 5.4 years ago by 68k • written 5.4 years ago by • 0
1
vote
2
replies
1.4k
views
GOSeq analysis in rice
goseq
5.7 years ago • updated 5.5 years ago Jitendra ▴ 10
0
votes
2
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1.2k
views
Goseq_analysis related help
goseq
5.7 years ago • updated 5.6 years ago kumararya563 • 0
0
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0
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801
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go seq related help, where I need to do mapping between go term and the protein -id
goseq
5.7 years ago • updated 5.6 years ago kumararya563 • 0
3
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2
replies
1.7k
views
Goseq analysis related help.
annotation goseq
updated 5.7 years ago by ★ 13k • written 5.7 years ago by • 0
0
votes
0
replies
1.6k
views
How to identify differentially expressed genes from Reactome pathways enriched according to GOseq?
goseq go rna-seq
5.9 years ago hasse.bossenbroek • 0
4
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5
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2.7k
views
Downgrading R to 3.6.0 version (GOseq problem)
goseq installation
6.2 years ago gdalsky ▴ 40
0
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1
reply
3.0k
views
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology goseq go
6.4 years ago Raito92 ▴ 60
2
votes
6
replies
1.8k
views
Can't install GOSEQ (dependency problem) on CentOS 7!
goseq r package r
updated 6.5 years ago by ★ 6.6k • written 6.5 years ago by ▴ 60
2
votes
1
reply
2.7k
views
GOseq analysis with only upregulated or downregulated genes
goseq
updated 6.9 years ago by ▴ 320 • written 6.9 years ago by ▴ 180
2
votes
2
replies
1.7k
views
Using GOseq for custom gene set enrichment test
goseq
updated 7.1 years ago by 53k • written 7.1 years ago by • 0
2
votes
2
replies
4.2k
views
How to access gene IDs associated with GO terms in GOSeq
GOseq ensemblid GO
updated 7.3 years ago by 68k • written 7.3 years ago by • 0
4
votes
10
replies
4.1k
views
Question: GoSeq: opposite pwf plot for up- and downregulated genes
goseq
10.3 years ago • updated 7.3 years ago Jakub ▴ 50
1
vote
3
replies
2.6k
views
goseq: Formatting category list for use with goseq
goseq category test
updated 7.4 years ago by 68k • written 7.4 years ago by ▴ 40
0
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0
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1.3k
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
7.5 years ago zhu • 0
0
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1
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1.8k
views
GOseq output but strange warning message!
GOseq GO pwf goseq
7.5 years ago TB18 • 0
1
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1
reply
1.9k
views
Goseq output with too many GO terms per category
go goseq goterm category
updated 7.5 years ago by 53k • written 7.5 years ago by • 0
3
votes
2
replies
1.6k
views
numInCat in goseq inconsistent with value obtained from org.Hs.eg.db
goseq
updated 7.6 years ago by 68k • written 7.6 years ago by • 0
1
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9
replies
3.3k
views
Using goseq with unsupported organism
goseq
updated 7.6 years ago by 68k • written 7.6 years ago by • 0
0
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0
replies
1.4k
views
GOseq No Underrepresented Categories
goseq go enrichment
7.7 years ago mart1139 • 0
8
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10
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2.5k
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Genes listed in GO categories
goseq biomart
updated 7.7 years ago by 53k • written 7.7 years ago by • 0
0
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2
replies
1.4k
views
goseq with hypergeometric method
goseq
updated 7.7 years ago by 53k • written 7.7 years ago by ▴ 40
0
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0
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1.9k
views
I finally solved my problem with installing "org.Hs.eg.db"!
goseq org.hs.eg.db
7.9 years ago nancyjwahl7 • 0
2
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6
replies
2.8k
views
Can Tximport average transcript length be used for GOSeq?
deseq2 tximport goseq
8.0 years ago casey.rimland ▴ 170
0
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6
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2.4k
views
How to link methylation code from UCSC (hg19-cg07790169) to ENSEMBL genome code (goseq procedure)
goseq methylation ensembl ucsc limma
8.0 years ago dusan.petrovic • 0
0
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2
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4.6k
views
DESeq2 followed by goseq GO-analysis: Extracting DE genes of enriched GO category
deseq2 goseq rnaseq go enrichment differential gene expression
updated 8.0 years ago by 43k • written 8.0 years ago by • 0
0
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3
replies
1.8k
views
What is the impact of using GOSeq to voom-adjusted RNA-seq Expressions ?
limma limma-voom goseq
updated 8.1 years ago by 53k • written 8.1 years ago by • 0
0
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1
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3.2k
views
installation of package 'goseq' had non-zero exit status
goseq installation
updated 8.2 years ago by 25k • written 8.2 years ago by • 0
0
votes
1
reply
2.3k
views
PANTHER.db- external pointer error
goseq pantherdb pathway analysis gene ontology
updated 8.2 years ago by 68k • written 8.2 years ago by ▴ 10
1
vote
2
replies
3.7k
views
GOseq: Determining ENSG IDs Associated with Genes Summarized by `numDEInCat` for Each Ontology Term
goseq gene ontology
updated 8.4 years ago by 68k • written 8.4 years ago by • 0
0
votes
1
reply
1.6k
views
Error: subscript out of bounds when using ucscGenomes() and supportedGenomes() functions in goseq and rtracklayer packages respctively
goseq rtracklayer
8.4 years ago mgdrnl • 0
2
votes
3
replies
2.4k
views
GOseq error on running nullp
goseq GO term
updated 8.4 years ago by 53k • written 8.4 years ago by • 0
0
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1
reply
2.5k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 8.5 years ago by 25k • written 8.5 years ago by • 0
0
votes
2
replies
2.1k
views
bias.data vector must have the same length as DEgenes vector!
edger goseq
updated 8.5 years ago by ★ 29k • written 8.5 years ago by ▴ 10
162 results • Page 1 of 4
Recent ...
Replies
Answer: Unable to find ENTREZ IDs by James W. MacDonald 68k
Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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