Showing : goseq • reset
1
vote
10
replies
228
views
How to run Goseq for list of ensembl gene IDs
goseq
21 days ago • updated 17 days ago Lucky • 0
1
vote
4
replies
107
views
goseq package loading issues
DESeq2 goseq
7 weeks ago avinashi • 0
3
votes
9
replies
284
views
Warning message when performing Gene Ontology analysis with goseq using hg38
goseq
updated 8 weeks ago by 56k • written 9 weeks ago by • 0
2
votes
3
replies
171
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 11 weeks ago by 56k • written 11 weeks ago by ▴ 10
2
votes
2
replies
146
views
Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 4 months ago by 56k • written 4 months ago by • 0
0
votes
1
reply
163
views
non-native GO annotation cannot be successfully introduced into Goseq
goseq rnaseq r
updated 6 months ago by 56k • written 6 months ago by • 0
1
vote
2
replies
149
views
GOSeq analysis in rice
goseq
10 months ago • updated 8 months ago nabiyogesh • 0
0
votes
2
replies
108
views
Goseq_analysis related help
goseq
9 months ago kumararya563 • 0
0
votes
0
replies
79
views
go seq related help, where I need to do mapping between go term and the protein -id
goseq
9 months ago kumararya563 • 0
2
votes
2
replies
101
views
Goseq analysis related help.
annotation goseq
updated 10 months ago by 13k • written 10 months ago by • 0
0
votes
0
replies
113
views
How to identify differentially expressed genes from Reactome pathways enriched according to GOseq?
goseq go rna-seq
12 months ago hasse.bossenbroek • 0
4
votes
5
replies
461
views
Downgrading R to 3.6.0 version (GOseq problem)
goseq installation
15 months ago gdalsky ▴ 40
0
votes
1
reply
453
views
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology goseq go
19 months ago Raito92 ▴ 40
2
votes
6
replies
236
views
Can't install GOSEQ (dependency problem) on CentOS 7!
goseq r package r
updated 19 months ago by ★ 4.9k • written 19 months ago by ▴ 40
1
vote
1
reply
266
views
GOseq analysis with only upregulated or downregulated genes
goseq
updated 24 months ago by ▴ 310 • written 2.0 years ago by ▴ 100
2
votes
2
replies
322
views
Using GOseq for custom gene set enrichment test
goseq
updated 2.2 years ago by 42k • written 2.2 years ago by • 0
0
votes
2
replies
436
views
How to access gene IDs associated with GO terms in GOSeq
GOseq ensemblid GO
updated 2.4 years ago by 56k • written 2.4 years ago by • 0
2
votes
10
replies
1.7k
views
Question: GoSeq: opposite pwf plot for up- and downregulated genes
goseq
5.5 years ago • updated 2.5 years ago Jakub ▴ 30
1
vote
3
replies
738
views
goseq: Formatting category list for use with goseq
goseq category test
updated 2.6 years ago by 56k • written 2.6 years ago by ▴ 30
0
votes
0
replies
309
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
2.7 years ago zhu • 0
0
votes
1
reply
471
views
GOseq output but strange warning message!
GOseq GO pwf goseq
2.7 years ago TB18 • 0
1
vote
1
reply
375
views
Goseq output with too many GO terms per category
go goseq goterm category
updated 2.7 years ago by 42k • written 2.7 years ago by • 0
3
votes
2
replies
356
views
numInCat in goseq inconsistent with value obtained from org.Hs.eg.db
goseq
updated 2.7 years ago by 56k • written 2.7 years ago by • 0
1
vote
9
replies
667
views
Using goseq with unsupported organism
goseq
updated 2.8 years ago by 56k • written 2.8 years ago by • 0
0
votes
0
replies
319
views
GOseq No Underrepresented Categories
goseq go enrichment
2.8 years ago mart1139 • 0
8
votes
10
replies
547
views
Genes listed in GO categories
goseq biomart
updated 2.8 years ago by 42k • written 2.9 years ago by • 0
0
votes
2
replies
349
views
goseq with hypergeometric method
goseq
updated 2.9 years ago by 42k • written 2.9 years ago by ▴ 30
0
votes
0
replies
595
views
I finally solved my problem with installing "org.Hs.eg.db"!
goseq org.hs.eg.db
3.0 years ago nancyjwahl7 • 0
2
votes
6
replies
702
views
Can Tximport average transcript length be used for GOSeq?
deseq2 tximport goseq
3.1 years ago casey.rimland ▴ 130
0
votes
6
replies
585
views
How to link methylation code from UCSC (hg19-cg07790169) to ENSEMBL genome code (goseq procedure)
goseq methylation ensembl ucsc limma
3.2 years ago • updated 3.1 years ago dusan.petrovic • 0
0
votes
2
replies
1.9k
views
DESeq2 followed by goseq GO-analysis: Extracting DE genes of enriched GO category
deseq2 goseq rnaseq go enrichment differential gene expression
updated 3.2 years ago by 32k • written 3.2 years ago by • 0
0
votes
3
replies
493
views
What is the impact of using GOSeq to voom-adjusted RNA-seq Expressions ?
limma limma-voom goseq
updated 3.2 years ago by 42k • written 3.2 years ago by • 0
0
votes
1
reply
1.6k
views
installation of package 'goseq' had non-zero exit status
goseq installation
updated 3.4 years ago by 25k • written 3.4 years ago by • 0
0
votes
1
reply
889
views
PANTHER.db- external pointer error
goseq pantherdb pathway analysis gene ontology
updated 3.4 years ago by 56k • written 3.4 years ago by ▴ 10
1
vote
2
replies
1.7k
views
GOseq: Determining ENSG IDs Associated with Genes Summarized by `numDEInCat` for Each Ontology Term
goseq gene ontology
updated 3.5 years ago by 56k • written 3.5 years ago by • 0
0
votes
1
reply
571
views
Error: subscript out of bounds when using ucscGenomes() and supportedGenomes() functions in goseq and rtracklayer packages respctively
goseq rtracklayer
3.5 years ago mgdrnl • 0
2
votes
3
replies
621
views
GOseq error on running nullp
goseq GO term
updated 3.5 years ago by 42k • written 3.5 years ago by • 0
0
votes
1
reply
1.3k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 3.6 years ago by 25k • written 3.6 years ago by • 0
0
votes
2
replies
754
views
bias.data vector must have the same length as DEgenes vector!
edger goseq
updated 3.6 years ago by ★ 26k • written 3.6 years ago by • 0
0
votes
0
replies
477
views
gene length file for GOseq
goseq
3.6 years ago mictadlo • 0
2
votes
2
replies
642
views
Error in normSplitFactor(f, x)
GenomicRanges rtracklayer goseq
updated 3.6 years ago by 11k • written 3.6 years ago by • 0
0
votes
3
replies
710
views
goseq after edgeR
edger goseq
updated 3.6 years ago by ★ 26k • written 3.6 years ago by • 0
0
votes
2
replies
853
views
GOseq: Correct for gene length or read count?
goseq dexseq
3.7 years ago i.sudbery ▴ 10
1
vote
1
reply
1.6k
views
goseq: In pcls(G) : initial point very close to some inequality constraints
goseq warning message pwf mgcv
updated 3.7 years ago by ▴ 310 • written 3.7 years ago by • 0
1
vote
1
reply
648
views
PANTHER.db function not found
pantherdb goseq biomart
updated 3.7 years ago by ★ 4.9k • written 3.7 years ago by ▴ 10
3
votes
5
replies
797
views
Does DEseq2 analysis make GOseq redundant?
deseq2 goseq gene ontology differential gene expression
3.8 years ago david.rinker ▴ 10
0
votes
3
replies
1.1k
views
Getting Differentially Expressed Genes from GOSeq Categories
goseq gene ontology biomart annotate category
updated 3.8 years ago by ▴ 340 • written 3.8 years ago by ▴ 10
0
votes
1
reply
608
views
installing getgo package
rnaseq goseq package installation
updated 3.9 years ago by 56k • written 3.9 years ago by • 0
2
votes
5
replies
961
views
GOseq: count bias correction variations?
Coverage goseq
updated 4.0 years ago by 42k • written 6.7 years ago by ▴ 40
1
vote
6
replies
863
views
goseq Error: could not find function "supportedOrganisms"
goseq
updated 4.1 years ago by • 0 • written 4.1 years ago by ▴ 30
40,580 results • Page 1 of 812
Recent ...
Replies
Answer: unable to forge custom BSgenome after update by Hervé Pagès 14k
Hi, You need to specify the `circ_seqs` field in your seed file. `forgeBSgenomeDataPkg()` needs to know which sequences are circular …
Comment: How to apply limma-trend or voom to batch corrected single cell data? (non-integ by hainct • 0
Thank you @alun
Comment: EnhancedVolcano plot with colCustom by Neeraja Vegesna ▴ 10
Hi Kevin, It worked once I added `names(keyvals.colour1)[keyvals.colour1 == '#8F8F8F'] <- 'NA'`. ![volcanoplot][1] Thanks a lot for you…
Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mwong043 • 0
Thanks Rory. I tried the first method by defining a vector containing the normalisation factors for my samples and it worked. I am just wo…
Comment: EnhancedVolcano plot with colCustom by Kevin Blighe 2.8k
Hi, that's great that it works with a lower number of groups. Can you re-check the logic flow when you are using more groups? *EnhancedVolc…
Votes
mgcv not updating
Answer: How to apply limma-trend or voom to batch corrected single cell data? (non-integ
Answer: How to apply limma-trend or voom to batch corrected single cell data? (non-integ
Answer: How to apply limma-trend or voom to batch corrected single cell data? (non-integ
Comment: EnhancedVolcano plot with colCustom
Awards • All
Scholar to Hervé Pagès 14k
Scholar to Aaron Lun ★ 26k
Popular Question to Luo Weijun ★ 1.5k
Scholar to Gordon Smyth 42k
Teacher to Robert Ivanek ▴ 660
Locations • All
India, 14 minutes ago
France, 17 minutes ago
France, 29 minutes ago
Spain, 30 minutes ago
Milan, 30 minutes ago
Traffic: 437 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6