Hi ,I got a problem while i installing the Rsubread package. I am using Windows10 OS, I tried to install Rsubread through Rstudio.
I typed as :
source("https://bioconductor.org/biocLite.R") biocLite("Rsubread")
then I got :
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.2 (BiocInstaller 1.20.1), R 3.2.3 (2015-12-10).
Installing package(s) ‘Rsubread’
Package which is only available in source form, and may need compilation of C/C++/Fortran: ‘Rsubread’
These will not be installed
Old packages: 'nnet'
Update all/some/none? [a/s/n]:
Even I typed a or s, this information kept showing up. How can I correctly install 'Rsubread' in R?
Please help.
Yep, availability is listed on the package 'landing page', https://bioconductor.org/packages/Rsubread. It would be more fun to use a docker image than cygwin (R itself is not supported on cygwin, even if Rsubread can be compiled there -- this sounds like a pretty 'advanced' solution).
Thanks, using cygwin like environment is too troublesome for me. Otherwise, I would not use R package for reads alignment.