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Question: How to Plot Coverage density in one graph and to interpret normalised graphs for RNA-seq data using TEQC
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gravatar for arunabioinfo
2.7 years ago by
arunabioinfo0 wrote:

 

Hi ,

 I am having two bam file of control and treatment sample of rna-seq data. and two target file for both control and treatment sample.When I am generating a coverage density. It says "Error in coverage.density(covlist) : 
  elements of 'covlist' do not seem to be coverages for the same targets (there are different numbers of target positions for different samples)". What should I do to plot coverage density of both control and infected sample in one graph and how do I interpret normalised graph  for rna-seq data.

Thanks

 

 

ADD COMMENTlink written 2.7 years ago by arunabioinfo0

I have no idea about this error but I would suggest that you include the code you used and the output of sessionInfo()

ADD REPLYlink written 2.7 years ago by Diego Diez730
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