plot Genome in aCGH
0
0
Entering edit mode
@sainiisha22-9972
Last seen 8.8 years ago

 i want to get the detail information at the gene level...so i have use aCGH pakage and i have created the acgh object.. i want to get the graph which show me the loss and gain . So i have use plot genome function ..plotGenome(ex.acgh,samples =c("OC1405","OC1663"), naut = 22,Y = TRUE, X= TRUE,data = log2.ratios(ex.acgh),yScale = c(-2,2),samplenames = sample.names(ex.acgh),ylb ="Log2Ratio") .. i am getting this error..

Error in order(datainfo$Chrom, datainfo$kb) : argument 1 is not a vector.

 In the synatx --- plotGenome(aCGH.obj, samples = 1:num.samples(aCGH.obj), naut = 22, Y = TRUE, X = TRUE, data = log2.ratios(aCGH.obj),chrominfo = human.chrom.info.Jul03,
   yScale = c(-2, 2), samplenames = sample.names(aCGH.obj), ylb = "Log2Ratio").

 what value we have to give in sample variable..

 

 

acgh • 997 views
ADD COMMENT

Login before adding your answer.

Traffic: 489 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6