Showing : acgh • reset
0
votes
1
reply
700
views
plot Genome in aCGH
acgh
updated 7.0 years ago by 25k • written 7.0 years ago by • 0
0
votes
2
replies
3.3k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 7.7 years ago by • 0 • written 10.0 years ago by ★ 8.2k
0
votes
0
replies
3.3k
views
Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
9.0 years ago Dan Tenenbaum ★ 8.2k
0
votes
0
replies
787
views
calling aberrations after segmentation with \"copynumber\" package
aCGH aCGH copynumber aCGH aCGH copynumber
9.2 years ago Guest User ★ 12k
0
votes
0
replies
3.6k
views
Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
9.5 years ago Dan Tenenbaum ★ 8.2k
0
votes
1
reply
793
views
aCGH telling me to run find.hmm.states before merge hmm.states even though I have.
aCGH aCGH aCGH aCGH
updated 9.5 years ago by ▴ 210 • written 9.5 years ago by ▴ 40
0
votes
0
replies
2.1k
views
8. CGHCall problems (Bernard North [guest]) : Bioconductor Digest, Vol 126, Issue 7
aCGH RNASeq ChIPSeq Proteomics Annotation Normalization GO Network Cancer ChipName probe
9.6 years ago Sarah JugurnauthLittle ▴ 20
0
votes
0
replies
937
views
CGHCall problems
aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall
9.7 years ago Guest User ★ 12k
0
votes
0
replies
960
views
readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH DNAcopy aCGH snapCGH aCGH DNAcopy aCGH snapCGH
9.7 years ago Guest User ★ 12k
0
votes
1
reply
1.1k
views
Workflow for Agilent aCGH anlysis
aCGH aCGH aCGH aCGH
updated 10.4 years ago by 13k • written 10.4 years ago by ▴ 10
0
votes
0
replies
941
views
Using aCGH library on Affymetrix Cytogenetics 2.7M microarray data
aCGH SNP PROcess aCGH aCGH SNP PROcess aCGH
10.4 years ago Guest User ★ 12k
0
votes
1
reply
835
views
limma - NA values after withinarray normalization
aCGH Normalization limma aCGH aCGH Normalization limma aCGH
updated 10.7 years ago by 47k • written 10.7 years ago by ▴ 10
0
votes
0
replies
1.1k
views
agilent aCGH analysis
aCGH aCGH aCGH aCGH
10.7 years ago Guest User ★ 12k
0
votes
0
replies
753
views
aCGH package. Plots: X axis label problems
aCGH Cancer aCGH aCGH Cancer aCGH
10.9 years ago Sarah JugurnauthLittle ▴ 20
0
votes
0
replies
812
views
aCGH segmentation with DNAcopy
aCGH probe DNAcopy aCGH aCGH probe DNAcopy aCGH
11.1 years ago Emilie Lalonde ▴ 10
0
votes
1
reply
881
views
Affymetrix 250K SNP aCGH
aCGH SNP Normalization affy aCGH aCGH SNP Normalization affy aCGH
updated 11.9 years ago by ▴ 210 • written 11.9 years ago by ▴ 330
0
votes
0
replies
878
views
analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
12.3 years ago Adeolu Adewoye ▴ 40
0
votes
0
replies
1.4k
views
seeking advice on analyzing CGH data
aCGH CGH aCGH aCGH CGH aCGH
12.4 years ago Paul Shannon ★ 1.1k
0
votes
1
reply
1.4k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 12.4 years ago by 21k • written 12.4 years ago by ▴ 110
0
votes
0
replies
1.1k
views
Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
12.5 years ago Martin Morgan 25k
0
votes
3
replies
1.2k
views
Circular binary segmentation for allele-specific CN data
aCGH aCGH aCGH aCGH
updated 12.6 years ago by ▴ 550 • written 12.6 years ago by ▴ 20
0
votes
0
replies
647
views
pint (& segmentation)
aCGH Preprocessing Cancer aCGH pint aCGH Preprocessing Cancer aCGH pint
12.9 years ago Leo Lahti ▴ 10
0
votes
0
replies
1.4k
views
getGEO problem
aCGH gpls aCGH GEOquery cycle aCGH gpls aCGH GEOquery cycle
13.1 years ago Sean Davis 21k
0
votes
0
replies
840
views
DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
13.2 years ago Daniel Rico ▴ 110
0
votes
0
replies
715
views
DNAcopy
aCGH DNAcopy aCGH aCGH DNAcopy aCGH
13.2 years ago Anguraj Sadanandam ▴ 10
0
votes
2
replies
971
views
GEOmetadb query
aCGH GO aCGH GEOmetadb aCGH GO aCGH GEOmetadb
updated 13.2 years ago by ▴ 170 • written 13.2 years ago by ▴ 10
0
votes
5
replies
801
views
failure to install: aCGH depends on unavailable package
aCGH Cancer aCGH aCGH Cancer aCGH
updated 13.5 years ago by 1.6k • written 13.5 years ago by ★ 1.1k
0
votes
0
replies
845
views
general CGH threshold question
aCGH CGH aCGH GLAD snapCGH aCGH CGH aCGH GLAD snapCGH
13.6 years ago Wolfgang RAFFELSBERGER ▴ 140
0
votes
1
reply
717
views
NimbleGen HG18 CGH data
aCGH CGH aCGH aCGH CGH aCGH
updated 13.7 years ago by 21k • written 13.7 years ago by ▴ 10
0
votes
4
replies
1.1k
views
snapCGH fails in runBioHMM
aCGH Microarray TwoChannel Cancer limma aCGH snapCGH aCGH Microarray TwoChannel Cancer
updated 13.9 years ago by ▴ 160 • written 13.9 years ago by ★ 1.1k
0
votes
0
replies
958
views
Warning in mergeLevels
aCGH Cancer aCGH aCGH Cancer aCGH
14.0 years ago Oscar Rueda ▴ 40
0
votes
4
replies
989
views
Problem in reading JPEG files for CGH arrays
aCGH Genetics aCGH GLAD aCGH Genetics aCGH GLAD
updated 14.2 years ago by 21k • written 14.2 years ago by ▴ 360
0
votes
3
replies
1.2k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
14.4 years ago Patrick Aboyoun 1.6k
0
votes
1
reply
1.7k
views
Entrez Gene ID to Probe Set Name
aCGH Sequencing miRNA Microarray Annotation Normalization GO Preprocessing Visualization
updated 14.4 years ago by ★ 7.2k • written 14.4 years ago by ▴ 300
0
votes
2
replies
864
views
CGHcall error
aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall
updated 14.5 years ago by ▴ 110 • written 14.5 years ago by ▴ 40
0
votes
0
replies
571
views
A question about criteria for calling gain and loss in aCGH data
aCGH Cancer aCGH aCGH Cancer aCGH
14.7 years ago affy snp ▴ 640
0
votes
2
replies
934
views
CGH-like workflow for Affymetrix SNP 500k
aCGH SNP Cancer DNAcopy aCGH aCGH SNP Cancer DNAcopy aCGH
updated 14.8 years ago by ★ 2.4k • written 14.8 years ago by ★ 1.9k
0
votes
3
replies
873
views
Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
15.0 years ago pingzhao Hu ▴ 210
0
votes
1
reply
576
views
Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
updated 15.0 years ago by 21k • written 15.0 years ago by ▴ 210
0
votes
0
replies
1.0k
views
Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
15.2 years ago Vincent J. Carey, Jr. 6.6k
0
votes
0
replies
565
views
aCGH package error: MAD
aCGH aCGH aCGH aCGH
15.3 years ago affy snp ▴ 640
0
votes
4
replies
1.0k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 15.5 years ago by ▴ 230 • written 15.5 years ago by ▴ 110
0
votes
2
replies
897
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 15.5 years ago by ▴ 40 • written 15.5 years ago by ▴ 110
0
votes
0
replies
517
views
snapCGH package for expression data?
aCGH Organism aCGH snapCGH aCGH Organism aCGH snapCGH
15.6 years ago Lyudmila Mikhaylova ▴ 20
0
votes
1
reply
892
views
Imputation problem in aCGH
aCGH Biobase multtest impute aCGH aCGH Biobase multtest impute aCGH
15.7 years ago Benjamin Otto ▴ 830
0
votes
0
replies
573
views
aCGH package analysis - duplicate spot averaging problem
aCGH aCGH snapCGH aCGH aCGH snapCGH
15.7 years ago Ian Roberts ▴ 70
0
votes
2
replies
788
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH convert aCGH snapCGH aCGH convert aCGH snapCGH
15.8 years ago Ian Roberts ▴ 70
0
votes
1
reply
995
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
15.8 years ago Steven McKinney ▴ 310
0
votes
2
replies
667
views
snapCGH question
aCGH aCGH snapCGH aCGH aCGH snapCGH
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 90
0
votes
0
replies
703
views
aCGH: using T instead of TRUE
aCGH Cancer aCGH aCGH Cancer aCGH
16.0 years ago Ramon Diaz ★ 1.1k
50 results • Page 1 of 1
Recent ...
Replies
Answer: *** caught segfault *** , cause 'memory not mapped' by James W. MacDonald 62k
You are unfortunately running out of RAM. As you note, you could possibly use `frma`, after generating frozen vectors using the `frmaTools`…
Comment: Help with Error in DiffBind by Chris • 0
Thanks Rory! result <- dba(samples) Error in if ((length(callers) == 1) & (callers[1] == "counts")) { : argument is of len…
Answer: Help with Error in DiffBind by Rory Stark ★ 4.7k
In your case, with only two replicates in each sample group, you can not perform a default analysis using only `dba.analyze()`. I suggest t…
Comment: Help with Error in DiffBind by Rory Stark ★ 4.7k
Looks like you should either delete the file > /labs/PI/atacseq_output_03172023/bwa/merged_library/DISEASED_REP2.mLb.clN.sorted.bam.bai …
Comment: How to getting synonymous SNPs from BiomaRt before timing out? by James W. MacDonald 62k
``` > options(timeout = 1e6) > z <- getBM(snp_attributes, c("ensembl_gene","so_mini_parent_name"), list("ENSG00000138376", "synonymous_vari…
Votes
WGCNA: Module preservation vs consensus analysis
WGCNA: Module preservation vs consensus analysis
Answer: Help with Error in DiffBind
Comment: Help with Error in DiffBind
Comment: how can I do gene differential analysis on data after vst
Awards • All
Supporter to linouhao ▴ 20
Popular Question to Seymoo • 0
Popular Question to Wolfgang Huber 13k
Popular Question to shepherl 3.4k
Popular Question to dr ▴ 10
Locations • All
WEHI, Melbourne, Australia, 11 minutes ago
EMBL Heidelberg, 16 minutes ago
New Zealand, 30 minutes ago
Switzerland, 32 minutes ago
Russia, 36 minutes ago
Traffic: 426 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6