Dear All,
I am trying to do differtial gene expression analysis of Breast Cancer vs. normal patients using data set GSE62944.
biocLite("AnnotationHub")
library(AnnotationHub)
hub = AnnotationHub()
Gives me error
downloading from ‘https://annotationhub.bioconductor.org/fetch/34295’
retrieving 1 resource
Downloading: 230 B
Warning message:
download failed
hub path: ‘https://annotationhub.bioconductor.org/fetch/34295’
cache path: ‘C:/LispHome/AppData/.AnnotationHub/34295’
reason: Forbidden (HTTP 403).
Error: failed to load 'AnnotationHub' resource
name: AH28855
title: RNA-Sequencing and clinical data for 7706 tumor samples from The Cancer Genome Atlas
reason: error in evaluating the argument 'x' in selecting a method for function 'get': Error in cache(.hub(x)) : 1 resources failed to download
Help would be appreciated
sessionInfo()
R version 3.2.3 (2015-12-10)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
locale:
[1] LC_COLLATE=English_Ireland.1252 LC_CTYPE=English_Ireland.1252 LC_MONETARY=English_Ireland.1252 LC_NUMERIC=C
[5] LC_TIME=English_Ireland.1252
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] AnnotationHub_2.2.5 Biobase_2.30.0 BiocGenerics_0.16.1
loaded via a namespace (and not attached):
[1] Rcpp_0.12.4 IRanges_2.4.8 digest_0.6.9 mime_0.4
[5] R6_2.1.2 xtable_1.8-2 DBI_0.3.1 stats4_3.2.3
[9] RSQLite_1.0.0 BiocInstaller_1.20.1 httr_1.1.0 curl_0.9.6
[13] S4Vectors_0.8.11 tools_3.2.3 shiny_0.13.2 httpuv_1.3.3
[17] AnnotationDbi_1.32.3 htmltools_0.3.5 interactiveDisplayBase_1.8.0